miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 42117 0.7 0.499427
Target:  5'- aCGacuaCGAGgGCCUcugGCACGCCgUGuCCCu -3'
miRNA:   3'- -GCg---GCUCgUGGA---CGUGCGGgACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 42310 0.68 0.604252
Target:  5'- aGCCgGAGUGcCCUGCGagguUGCUgaCUGGCCCg -3'
miRNA:   3'- gCGG-CUCGU-GGACGU----GCGG--GACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 42639 0.66 0.739408
Target:  5'- cCGCCGuGgGCCU-CACGUagugGGCCCa -3'
miRNA:   3'- -GCGGCuCgUGGAcGUGCGgga-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 42705 0.7 0.499427
Target:  5'- gGCCcGGCGCCgcgGCGCccCCCUGGgCCg -3'
miRNA:   3'- gCGGcUCGUGGa--CGUGc-GGGACUgGG- -5'
28914 5' -61.3 NC_006146.1 + 43802 0.7 0.490259
Target:  5'- -uCUGGGCguGCCUGUcccaccgcucCGCCCUGGCCCu -3'
miRNA:   3'- gcGGCUCG--UGGACGu---------GCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 44064 0.71 0.445675
Target:  5'- uGuuGgGGCGCCUGCAUGCCggGACUg -3'
miRNA:   3'- gCggC-UCGUGGACGUGCGGgaCUGGg -5'
28914 5' -61.3 NC_006146.1 + 44245 0.71 0.431891
Target:  5'- gGCCGGGCGgcgguguccauugccCCUGCGgGCCCcggggUGugCCc -3'
miRNA:   3'- gCGGCUCGU---------------GGACGUgCGGG-----ACugGG- -5'
28914 5' -61.3 NC_006146.1 + 45533 0.68 0.594513
Target:  5'- gGCCuGGGCcuCCUugggcuugGC-CGCCCUGGCCUc -3'
miRNA:   3'- gCGG-CUCGu-GGA--------CGuGCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 45711 0.71 0.437031
Target:  5'- uCGCaguaGAGCAgCgggGcCACGaCCCUGACCUg -3'
miRNA:   3'- -GCGg---CUCGUgGa--C-GUGC-GGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 46108 0.76 0.21765
Target:  5'- uCGCgCGAGCAgCagcagGCAUGCCCgGGCCCu -3'
miRNA:   3'- -GCG-GCUCGUgGa----CGUGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 47198 0.66 0.701557
Target:  5'- cCGCCccGAGCGCCagGC---CCCUGGCCg -3'
miRNA:   3'- -GCGG--CUCGUGGa-CGugcGGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 47685 0.66 0.730053
Target:  5'- uCGCCcuguaccAGCugCUGUccacCGCCCUGugCUc -3'
miRNA:   3'- -GCGGc------UCGugGACGu---GCGGGACugGG- -5'
28914 5' -61.3 NC_006146.1 + 47726 0.7 0.481171
Target:  5'- gCGCCcgGAGCucgucguccgggGCCUccucGCGCGCCCUGGCg- -3'
miRNA:   3'- -GCGG--CUCG------------UGGA----CGUGCGGGACUGgg -5'
28914 5' -61.3 NC_006146.1 + 49949 0.69 0.555868
Target:  5'- cCGCCGuGUACUUGCGCacgugcaagGCCCgcgguuuugGACCg -3'
miRNA:   3'- -GCGGCuCGUGGACGUG---------CGGGa--------CUGGg -5'
28914 5' -61.3 NC_006146.1 + 50555 0.67 0.633557
Target:  5'- gGgUGGGCACCUGCAgGUuuCCaGACCa -3'
miRNA:   3'- gCgGCUCGUGGACGUgCG--GGaCUGGg -5'
28914 5' -61.3 NC_006146.1 + 51733 0.68 0.627691
Target:  5'- aCGCCGAGCaaaaGCCgccGCAUaGCCCgacacgcguaaaaggUGGCCUc -3'
miRNA:   3'- -GCGGCUCG----UGGa--CGUG-CGGG---------------ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 51929 0.66 0.739408
Target:  5'- cCGaCGGGCGgccccggugcggUCUGCGCGCCaaCUGGCgCCg -3'
miRNA:   3'- -GCgGCUCGU------------GGACGUGCGG--GACUG-GG- -5'
28914 5' -61.3 NC_006146.1 + 52399 0.67 0.653099
Target:  5'- aCGCCGAGUACgUGgGgGCCgUcaaGACCg -3'
miRNA:   3'- -GCGGCUCGUGgACgUgCGGgA---CUGGg -5'
28914 5' -61.3 NC_006146.1 + 52551 0.73 0.348771
Target:  5'- cCGCCGAGCGgUagaUGUucacGCGCCCgccGGCCCu -3'
miRNA:   3'- -GCGGCUCGUgG---ACG----UGCGGGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 52843 0.72 0.356251
Target:  5'- gGCCGAGcCGCC-GC-CGCCCccGCCCg -3'
miRNA:   3'- gCGGCUC-GUGGaCGuGCGGGacUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.