miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 170700 0.67 0.672581
Target:  5'- cCGUCGcgggGGCACCgGCGCGuagagaagaCCCUuuuccGACCCa -3'
miRNA:   3'- -GCGGC----UCGUGGaCGUGC---------GGGA-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 170595 0.72 0.356251
Target:  5'- aGCUGGGCgugGCgaGCGCGCCg-GGCCCg -3'
miRNA:   3'- gCGGCUCG---UGgaCGUGCGGgaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 170434 0.7 0.472165
Target:  5'- cCGCgGGGC-CCgGCGCGUgCCggggGACCCg -3'
miRNA:   3'- -GCGgCUCGuGGaCGUGCG-GGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 170314 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 169960 0.67 0.6404
Target:  5'- uGCCaGGGCcuucgggacgggagGCCggcGCGCGCCCgggGuCCCg -3'
miRNA:   3'- gCGG-CUCG--------------UGGa--CGUGCGGGa--CuGGG- -5'
28914 5' -61.3 NC_006146.1 + 169772 0.66 0.691941
Target:  5'- uCGCgGgGGCACCgGCGCGuggagaagaCCCUucuccGACCCa -3'
miRNA:   3'- -GCGgC-UCGUGGaCGUGC---------GGGA-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 169503 0.7 0.472165
Target:  5'- cCGCgGGGC-CCgGCGCGUgCCggggGACCCg -3'
miRNA:   3'- -GCGgCUCGuGGaCGUGCG-GGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 169383 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 169028 0.67 0.6404
Target:  5'- uGCCaGGGCcuucgggacgggagGCCggcGCGCGCCCgggGuCCCg -3'
miRNA:   3'- gCGG-CUCG--------------UGGa--CGUGCGGGa--CuGGG- -5'
28914 5' -61.3 NC_006146.1 + 168840 0.66 0.691941
Target:  5'- uCGCgGgGGCACCgGCGCGuggagaagaCCCUucuccGACCCa -3'
miRNA:   3'- -GCGgC-UCGUGGaCGUGC---------GGGA-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 168571 0.7 0.472165
Target:  5'- cCGCgGGGC-CCgGCGCGUgCCggggGACCCg -3'
miRNA:   3'- -GCGgCUCGuGGaCGUGCG-GGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 168451 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 168096 0.67 0.6404
Target:  5'- uGCCaGGGCcuucgggacgggagGCCggcGCGCGCCCgggGuCCCg -3'
miRNA:   3'- gCGG-CUCG--------------UGGa--CGUGCGGGa--CuGGG- -5'
28914 5' -61.3 NC_006146.1 + 167908 0.66 0.691941
Target:  5'- uCGCgGgGGCACCgGCGCGuggagaagaCCCUucuccGACCCa -3'
miRNA:   3'- -GCGgC-UCGUGGaCGUGC---------GGGA-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 167639 0.7 0.490259
Target:  5'- cCGCgGGGC-CCgGCGCGUgCCgggGGCCCg -3'
miRNA:   3'- -GCGgCUCGuGGaCGUGCG-GGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 167519 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 167164 0.67 0.6404
Target:  5'- uGCCaGGGCcuucgggacgggagGCCggcGCGCGCCCgggGuCCCg -3'
miRNA:   3'- gCGG-CUCG--------------UGGa--CGUGCGGGa--CuGGG- -5'
28914 5' -61.3 NC_006146.1 + 166378 0.67 0.68228
Target:  5'- uGCCG-GCACCgagaugGuCACcCCCcgcUGGCCCg -3'
miRNA:   3'- gCGGCuCGUGGa-----C-GUGcGGG---ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 165684 0.71 0.437031
Target:  5'- gGCCGgcaAGgACCUGCAC-CCCUagcucccccaGGCCCa -3'
miRNA:   3'- gCGGC---UCgUGGACGUGcGGGA----------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 162363 0.71 0.41169
Target:  5'- gCGCCuuggagaugGAGCcCCUugGCGCGCCCgcgcccggGACCCc -3'
miRNA:   3'- -GCGG---------CUCGuGGA--CGUGCGGGa-------CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.