miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 161758 0.66 0.739408
Target:  5'- gGCUGAGguCCgaggGgGCGCCUgggcgggGGCCUg -3'
miRNA:   3'- gCGGCUCguGGa---CgUGCGGGa------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 161302 0.69 0.565471
Target:  5'- aGCagGAGCugCUuaGCGuggugaagcCCCUGACCCu -3'
miRNA:   3'- gCGg-CUCGugGAcgUGC---------GGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 160162 0.69 0.50867
Target:  5'- aGCCGcauGGCcCCgGCugGCUCUGgcuGCCCa -3'
miRNA:   3'- gCGGC---UCGuGGaCGugCGGGAC---UGGG- -5'
28914 5' -61.3 NC_006146.1 + 158406 0.66 0.730053
Target:  5'- uGCaCGAGUACUgcaGCACGUgguagcagcuCUUGACCUg -3'
miRNA:   3'- gCG-GCUCGUGGa--CGUGCG----------GGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 158177 0.67 0.643332
Target:  5'- gGCUGGucuCGCUUGCugGCCCcaaUGGCCg -3'
miRNA:   3'- gCGGCUc--GUGGACGugCGGG---ACUGGg -5'
28914 5' -61.3 NC_006146.1 + 157728 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 157463 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 157359 0.77 0.177414
Target:  5'- gCGCCcGGCGCCUGCagcagguuccuguccACGCCUcGGCCCa -3'
miRNA:   3'- -GCGGcUCGUGGACG---------------UGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 157060 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 156858 0.71 0.445675
Target:  5'- aGCCG-GCGCUUGCGCcuGCCCccGCCUg -3'
miRNA:   3'- gCGGCuCGUGGACGUG--CGGGacUGGG- -5'
28914 5' -61.3 NC_006146.1 + 155867 0.68 0.594513
Target:  5'- gGcCCGAG-ACCUGgGgGCCCgGGCCUg -3'
miRNA:   3'- gC-GGCUCgUGGACgUgCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 155846 0.71 0.403448
Target:  5'- cCGCC-AGUGCCUccucGCAgGCCCggcgGGCCCu -3'
miRNA:   3'- -GCGGcUCGUGGA----CGUgCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 155583 0.68 0.584799
Target:  5'- cCGCCagGGGCACaccgggGCugGCCUccGGCCCc -3'
miRNA:   3'- -GCGG--CUCGUGga----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 155327 0.75 0.24447
Target:  5'- uCGCCGAcGCGCCUGUcCuCCCaggGACCCg -3'
miRNA:   3'- -GCGGCU-CGUGGACGuGcGGGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 155098 0.67 0.643332
Target:  5'- gGCUGGucuCGCUUGCugGCCCcaaUGGCCg -3'
miRNA:   3'- gCGGCUc--GUGGACGugCGGG---ACUGGg -5'
28914 5' -61.3 NC_006146.1 + 154651 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 154385 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 153982 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 152789 0.68 0.594513
Target:  5'- gGcCCGAG-ACCUGgGgGCCCgGGCCUg -3'
miRNA:   3'- gC-GGCUCgUGGACgUgCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 152252 0.67 0.662851
Target:  5'- gGCCGGGCA--UGCGauCCCUGGCUg -3'
miRNA:   3'- gCGGCUCGUggACGUgcGGGACUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.