miRNA display CGI


Results 41 - 60 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 152020 0.67 0.643332
Target:  5'- gGCUGGucuCGCUUGCugGCCCcaaUGGCCg -3'
miRNA:   3'- gCGGCUc--GUGGACGugCGGG---ACUGGg -5'
28914 5' -61.3 NC_006146.1 + 151952 0.67 0.662851
Target:  5'- gGCCGcuGGCGCCaccaCAUGCCCUu-CCCg -3'
miRNA:   3'- gCGGC--UCGUGGac--GUGCGGGAcuGGG- -5'
28914 5' -61.3 NC_006146.1 + 151573 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 151307 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 150904 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 150706 0.71 0.428484
Target:  5'- uGCCcAGCcuCCUGCGCcCCCgggGGCCCu -3'
miRNA:   3'- gCGGcUCGu-GGACGUGcGGGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 149997 0.67 0.672581
Target:  5'- gGCCGgacucAGgGCCUcCACgaagGCCUUGGCCCg -3'
miRNA:   3'- gCGGC-----UCgUGGAcGUG----CGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 149711 0.68 0.594513
Target:  5'- gGcCCGAG-ACCUGgGgGCCCgGGCCUg -3'
miRNA:   3'- gC-GGCUCgUGGACgUgCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 149659 0.69 0.546312
Target:  5'- gCGCCGGcagcGCGCCUGCACGaaCUugcaGGCCg -3'
miRNA:   3'- -GCGGCU----CGUGGACGUGCggGA----CUGGg -5'
28914 5' -61.3 NC_006146.1 + 148942 0.67 0.643332
Target:  5'- gGCUGGucuCGCUUGCugGCCCcaaUGGCCg -3'
miRNA:   3'- gCGGCUc--GUGGACGugCGGG---ACUGGg -5'
28914 5' -61.3 NC_006146.1 + 148495 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 148229 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 147826 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 147400 0.66 0.739408
Target:  5'- aCGgCGGGCACCUcccagaGCGaGCCCaccaGCCCg -3'
miRNA:   3'- -GCgGCUCGUGGA------CGUgCGGGac--UGGG- -5'
28914 5' -61.3 NC_006146.1 + 146792 0.74 0.293017
Target:  5'- gGCCcGGUGCCaGC-CGCCCUcGACCCg -3'
miRNA:   3'- gCGGcUCGUGGaCGuGCGGGA-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 146634 0.68 0.594513
Target:  5'- gGcCCGAG-ACCUGgGgGCCCgGGCCUg -3'
miRNA:   3'- gC-GGCUCgUGGACgUgCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 146529 0.71 0.445675
Target:  5'- gCGCCGcGC-CCUggaGCugGCCCUGcGCCa -3'
miRNA:   3'- -GCGGCuCGuGGA---CGugCGGGAC-UGGg -5'
28914 5' -61.3 NC_006146.1 + 146055 0.7 0.463245
Target:  5'- aGCUGcAGCACCUGCuuGUUggUGACCCg -3'
miRNA:   3'- gCGGC-UCGUGGACGugCGGg-ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 145864 0.67 0.643332
Target:  5'- gGCUGGucuCGCUUGCugGCCCcaaUGGCCg -3'
miRNA:   3'- gCGGCUc--GUGGACGugCGGG---ACUGGg -5'
28914 5' -61.3 NC_006146.1 + 145417 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.