miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 145151 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 145041 0.66 0.730053
Target:  5'- -cCCGGGCAgCgugagcGCGCaGCCCUGGCgCu -3'
miRNA:   3'- gcGGCUCGUgGa-----CGUG-CGGGACUGgG- -5'
28914 5' -61.3 NC_006146.1 + 144748 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 143556 0.68 0.594513
Target:  5'- gGcCCGAG-ACCUGgGgGCCCgGGCCUg -3'
miRNA:   3'- gC-GGCUCgUGGACgUgCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 142786 0.67 0.643332
Target:  5'- gGCUGGucuCGCUUGCugGCCCcaaUGGCCg -3'
miRNA:   3'- gCGGCUc--GUGGACGugCGGG---ACUGGg -5'
28914 5' -61.3 NC_006146.1 + 142608 0.66 0.701557
Target:  5'- gGuuGAGguCC-GCAUGCCCaauccUGGCCUc -3'
miRNA:   3'- gCggCUCguGGaCGUGCGGG-----ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 142339 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 142073 0.75 0.250153
Target:  5'- uGCCGGGguCCcuccgGCugGCCUggGACCCg -3'
miRNA:   3'- gCGGCUCguGGa----CGugCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 141671 0.66 0.691941
Target:  5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3'
miRNA:   3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 138751 0.78 0.159492
Target:  5'- aGCUGAGCgGCCUGcCACgGCCCUGGCUa -3'
miRNA:   3'- gCGGCUCG-UGGAC-GUG-CGGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 137973 0.66 0.71112
Target:  5'- gGCCGGGCcucccggggGCCcgGCggggugggggguGCGCCCccagccgGACCCu -3'
miRNA:   3'- gCGGCUCG---------UGGa-CG------------UGCGGGa------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 137834 0.68 0.604252
Target:  5'- gGCCGAGCcaagauaCUGCuguGCCCggccuacaUGACCCu -3'
miRNA:   3'- gCGGCUCGug-----GACGug-CGGG--------ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 137509 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 137416 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 137323 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 137230 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 137137 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 137044 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 136951 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 136858 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.