miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 157359 0.77 0.177414
Target:  5'- gCGCCcGGCGCCUGCagcagguuccuguccACGCCUcGGCCCa -3'
miRNA:   3'- -GCGGcUCGUGGACG---------------UGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 28310 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 155846 0.71 0.403448
Target:  5'- cCGCC-AGUGCCUccucGCAgGCCCggcgGGCCCu -3'
miRNA:   3'- -GCGGcUCGUGGA----CGUgCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 51929 0.66 0.739408
Target:  5'- cCGaCGGGCGgccccggugcggUCUGCGCGCCaaCUGGCgCCg -3'
miRNA:   3'- -GCgGCUCGU------------GGACGUGCGG--GACUG-GG- -5'
28914 5' -61.3 NC_006146.1 + 146792 0.74 0.293017
Target:  5'- gGCCcGGUGCCaGC-CGCCCUcGACCCg -3'
miRNA:   3'- gCGGcUCGUGGaCGuGCGGGA-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 101036 0.73 0.313073
Target:  5'- gGCCucGguCCUGCAUGCCUgcgccugcgUGACCCg -3'
miRNA:   3'- gCGGcuCguGGACGUGCGGG---------ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 170595 0.72 0.356251
Target:  5'- aGCUGGGCgugGCgaGCGCGCCg-GGCCCg -3'
miRNA:   3'- gCGGCUCG---UGgaCGUGCGGgaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 52843 0.72 0.356251
Target:  5'- gGCCGAGcCGCC-GC-CGCCCccGCCCg -3'
miRNA:   3'- gCGGCUC-GUGGaCGuGCGGGacUGGG- -5'
28914 5' -61.3 NC_006146.1 + 55705 0.72 0.363842
Target:  5'- cCGCCGGGgGgcUCUGCcCGCCgCUGGCCUc -3'
miRNA:   3'- -GCGGCUCgU--GGACGuGCGG-GACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 25232 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 15998 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 127920 0.72 0.363842
Target:  5'- gCGCCGGGCugCUGCccacaaacuccGCGCUCaGcguGCCCg -3'
miRNA:   3'- -GCGGCUCGugGACG-----------UGCGGGaC---UGGG- -5'
28914 5' -61.3 NC_006146.1 + 127618 0.76 0.210605
Target:  5'- aCGCUaGGCACCUGCcggaccuccaggcCGCCCUGugCCu -3'
miRNA:   3'- -GCGGcUCGUGGACGu------------GCGGGACugGG- -5'
28914 5' -61.3 NC_006146.1 + 19076 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 46108 0.76 0.21765
Target:  5'- uCGCgCGAGCAgCagcagGCAUGCCCgGGCCCu -3'
miRNA:   3'- -GCG-GCUCGUgGa----CGUGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 128137 0.72 0.356251
Target:  5'- gCGCCGccuGCACCUGUcgGCCCUGcuGCCg -3'
miRNA:   3'- -GCGGCu--CGUGGACGugCGGGAC--UGGg -5'
28914 5' -61.3 NC_006146.1 + 22154 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 128324 0.72 0.379358
Target:  5'- -cCCGGGCugguCCUGCugGCCCUGgagaugaaGCCg -3'
miRNA:   3'- gcGGCUCGu---GGACGugCGGGAC--------UGGg -5'
28914 5' -61.3 NC_006146.1 + 155327 0.75 0.24447
Target:  5'- uCGCCGAcGCGCCUGUcCuCCCaggGACCCg -3'
miRNA:   3'- -GCGGCU-CGUGGACGuGcGGGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 52551 0.73 0.348771
Target:  5'- cCGCCGAGCGgUagaUGUucacGCGCCCgccGGCCCu -3'
miRNA:   3'- -GCGGCUCGUgG---ACG----UGCGGGa--CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.