miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 168451 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 155846 0.71 0.403448
Target:  5'- cCGCC-AGUGCCUccucGCAgGCCCggcgGGCCCu -3'
miRNA:   3'- -GCGGcUCGUGGA----CGUgCGGGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 127920 0.72 0.363842
Target:  5'- gCGCCGGGCugCUGCccacaaacuccGCGCUCaGcguGCCCg -3'
miRNA:   3'- -GCGGCUCGugGACG-----------UGCGGGaC---UGGG- -5'
28914 5' -61.3 NC_006146.1 + 155327 0.75 0.24447
Target:  5'- uCGCCGAcGCGCCUGUcCuCCCaggGACCCg -3'
miRNA:   3'- -GCGGCU-CGUGGACGuGcGGGa--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 41622 0.7 0.455293
Target:  5'- cCGCUGGGC-CCggGCGCagaccagccccacauCCCUGACCCu -3'
miRNA:   3'- -GCGGCUCGuGGa-CGUGc--------------GGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 44245 0.71 0.431891
Target:  5'- gGCCGGGCGgcgguguccauugccCCUGCGgGCCCcggggUGugCCc -3'
miRNA:   3'- gCGGCUCGU---------------GGACGUgCGGG-----ACugGG- -5'
28914 5' -61.3 NC_006146.1 + 28310 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 46108 0.76 0.21765
Target:  5'- uCGCgCGAGCAgCagcagGCAUGCCCgGGCCCu -3'
miRNA:   3'- -GCG-GCUCGUgGa----CGUGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 119240 0.71 0.428484
Target:  5'- -uCUGAGUcCCgGCACcgGCCCUGGCCCc -3'
miRNA:   3'- gcGGCUCGuGGaCGUG--CGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 127618 0.76 0.210605
Target:  5'- aCGCUaGGCACCUGCcggaccuccaggcCGCCCUGugCCu -3'
miRNA:   3'- -GCGGcUCGUGGACGu------------GCGGGACugGG- -5'
28914 5' -61.3 NC_006146.1 + 128324 0.72 0.379358
Target:  5'- -cCCGGGCugguCCUGCugGCCCUGgagaugaaGCCg -3'
miRNA:   3'- gcGGCUCGu---GGACGugCGGGAC--------UGGg -5'
28914 5' -61.3 NC_006146.1 + 169383 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 19076 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 55705 0.72 0.363842
Target:  5'- cCGCCGGGgGgcUCUGCcCGCCgCUGGCCUc -3'
miRNA:   3'- -GCGGCUCgU--GGACGuGCGG-GACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 170595 0.72 0.356251
Target:  5'- aGCUGGGCgugGCgaGCGCGCCg-GGCCCg -3'
miRNA:   3'- gCGGCUCG---UGgaCGUGCGGgaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 146792 0.74 0.293017
Target:  5'- gGCCcGGUGCCaGC-CGCCCUcGACCCg -3'
miRNA:   3'- gCGGcUCGUGGaCGuGCGGGA-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 170434 0.7 0.472165
Target:  5'- cCGCgGGGC-CCgGCGCGUgCCggggGACCCg -3'
miRNA:   3'- -GCGgCUCGuGGaCGUGCG-GGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 146055 0.7 0.463245
Target:  5'- aGCUGcAGCACCUGCuuGUUggUGACCCg -3'
miRNA:   3'- gCGGC-UCGUGGACGugCGGg-ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 105085 0.71 0.445675
Target:  5'- gGCuCGAGCGCCUgGCGCaGCUcgucuCUGGCCUc -3'
miRNA:   3'- gCG-GCUCGUGGA-CGUG-CGG-----GACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 45711 0.71 0.437031
Target:  5'- uCGCaguaGAGCAgCgggGcCACGaCCCUGACCUg -3'
miRNA:   3'- -GCGg---CUCGUgGa--C-GUGC-GGGACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.