miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 146055 0.7 0.463245
Target:  5'- aGCUGcAGCACCUGCuuGUUggUGACCCg -3'
miRNA:   3'- gCGGC-UCGUGGACGugCGGg-ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 2795 0.7 0.490259
Target:  5'- aCGCCaGGCGCCaGCAgGCCUUccaGACCa -3'
miRNA:   3'- -GCGGcUCGUGGaCGUgCGGGA---CUGGg -5'
28914 5' -61.3 NC_006146.1 + 101036 0.73 0.313073
Target:  5'- gGCCucGguCCUGCAUGCCUgcgccugcgUGACCCg -3'
miRNA:   3'- gCGGcuCguGGACGUGCGGG---------ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 52843 0.72 0.356251
Target:  5'- gGCCGAGcCGCC-GC-CGCCCccGCCCg -3'
miRNA:   3'- gCGGCUC-GUGGaCGuGCGGGacUGGG- -5'
28914 5' -61.3 NC_006146.1 + 12921 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 22154 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 162363 0.71 0.41169
Target:  5'- gCGCCuuggagaugGAGCcCCUugGCGCGCCCgcgcccggGACCCc -3'
miRNA:   3'- -GCGG---------CUCGuGGA--CGUGCGGGa-------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 169383 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 44245 0.71 0.431891
Target:  5'- gGCCGGGCGgcgguguccauugccCCUGCGgGCCCcggggUGugCCc -3'
miRNA:   3'- gCGGCUCGU---------------GGACGUgCGGG-----ACugGG- -5'
28914 5' -61.3 NC_006146.1 + 156858 0.71 0.445675
Target:  5'- aGCCG-GCGCUUGCGCcuGCCCccGCCUg -3'
miRNA:   3'- gCGGCuCGUGGACGUG--CGGGacUGGG- -5'
28914 5' -61.3 NC_006146.1 + 27847 0.68 0.623781
Target:  5'- gCGCCGGG-GCCUuuCAgGCCCUcgGGCCCc -3'
miRNA:   3'- -GCGGCUCgUGGAc-GUgCGGGA--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 18613 0.68 0.623781
Target:  5'- gCGCCGGG-GCCUuuCAgGCCCUcgGGCCCc -3'
miRNA:   3'- -GCGGCUCgUGGAc-GUgCGGGA--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 3648 0.69 0.51705
Target:  5'- uCGCUGAGCuCCUGCcucaccaGCGUUCUGucacACCCc -3'
miRNA:   3'- -GCGGCUCGuGGACG-------UGCGGGAC----UGGG- -5'
28914 5' -61.3 NC_006146.1 + 35030 0.69 0.527366
Target:  5'- aCGcCCGGGUcaugACCUGUcacuCGCCUUGuCCCg -3'
miRNA:   3'- -GC-GGCUCG----UGGACGu---GCGGGACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 49949 0.69 0.555868
Target:  5'- cCGCCGuGUACUUGCGCacgugcaagGCCCgcgguuuugGACCg -3'
miRNA:   3'- -GCGGCuCGUGGACGUG---------CGGGa--------CUGGg -5'
28914 5' -61.3 NC_006146.1 + 88379 0.68 0.575117
Target:  5'- gGCUGAuauUACCaggcgUGCAgGCCCUGACCa -3'
miRNA:   3'- gCGGCUc--GUGG-----ACGUgCGGGACUGGg -5'
28914 5' -61.3 NC_006146.1 + 127153 0.68 0.584799
Target:  5'- aGCUGgacGGCGUCaUGCGCGaccaCCUGGCCCg -3'
miRNA:   3'- gCGGC---UCGUGG-ACGUGCg---GGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 45533 0.68 0.594513
Target:  5'- gGCCuGGGCcuCCUugggcuugGC-CGCCCUGGCCUc -3'
miRNA:   3'- gCGG-CUCGu-GGA--------CGuGCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 55936 0.68 0.604252
Target:  5'- gGCCGugGGCugCUGCGUGCCC---CCCg -3'
miRNA:   3'- gCGGC--UCGugGACGUGCGGGacuGGG- -5'
28914 5' -61.3 NC_006146.1 + 1182 0.68 0.61401
Target:  5'- uCGgUG-GCugCUGUAUGCUCUGuCCCu -3'
miRNA:   3'- -GCgGCuCGugGACGUGCGGGACuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.