miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 55049 0.69 0.517985
Target:  5'- gGCCGGG-GCCUGCcacagGCGgCCguaucgGACCCa -3'
miRNA:   3'- gCGGCUCgUGGACG-----UGCgGGa-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 130053 0.69 0.555868
Target:  5'- aGCCGGGCcuCCaagaGCGCcCCCUGcCCCu -3'
miRNA:   3'- gCGGCUCGu-GGa---CGUGcGGGACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 99218 0.69 0.555868
Target:  5'- gGCCGcGGCcUCgGCGCGCCC-GACCa -3'
miRNA:   3'- gCGGC-UCGuGGaCGUGCGGGaCUGGg -5'
28914 5' -61.3 NC_006146.1 + 62180 0.68 0.584799
Target:  5'- gGCgGA-CACCaGCACGCCCacgGAgCCa -3'
miRNA:   3'- gCGgCUcGUGGaCGUGCGGGa--CUgGG- -5'
28914 5' -61.3 NC_006146.1 + 56688 0.68 0.584799
Target:  5'- uCGCCGGGCugCU--ACcCCCUccGGCCCg -3'
miRNA:   3'- -GCGGCUCGugGAcgUGcGGGA--CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 55936 0.68 0.604252
Target:  5'- gGCCGugGGCugCUGCGUGCCC---CCCg -3'
miRNA:   3'- gCGGC--UCGugGACGUGCGGGacuGGG- -5'
28914 5' -61.3 NC_006146.1 + 1182 0.68 0.61401
Target:  5'- uCGgUG-GCugCUGUAUGCUCUGuCCCu -3'
miRNA:   3'- -GCgGCuCGugGACGUGCGGGACuGGG- -5'
28914 5' -61.3 NC_006146.1 + 156858 0.71 0.445675
Target:  5'- aGCCG-GCGCUUGCGCcuGCCCccGCCUg -3'
miRNA:   3'- gCGGCuCGUGGACGUG--CGGGacUGGG- -5'
28914 5' -61.3 NC_006146.1 + 44245 0.71 0.431891
Target:  5'- gGCCGGGCGgcgguguccauugccCCUGCGgGCCCcggggUGugCCc -3'
miRNA:   3'- gCGGCUCGU---------------GGACGUgCGGG-----ACugGG- -5'
28914 5' -61.3 NC_006146.1 + 169383 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 167164 0.67 0.6404
Target:  5'- uGCCaGGGCcuucgggacgggagGCCggcGCGCGCCCgggGuCCCg -3'
miRNA:   3'- gCGG-CUCG--------------UGGa--CGUGCGGGa--CuGGG- -5'
28914 5' -61.3 NC_006146.1 + 3831 0.67 0.653099
Target:  5'- gGCgGGGCACCcccGC-UGCCCUaccgGACCUg -3'
miRNA:   3'- gCGgCUCGUGGa--CGuGCGGGA----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 135712 0.67 0.653099
Target:  5'- uGCCGGGUcCgCUGCcCGUCCUGgaGCUCg -3'
miRNA:   3'- gCGGCUCGuG-GACGuGCGGGAC--UGGG- -5'
28914 5' -61.3 NC_006146.1 + 99362 0.67 0.662851
Target:  5'- gCGUCG-GCGCCcgggccGCGCGUUgaGGCCCa -3'
miRNA:   3'- -GCGGCuCGUGGa-----CGUGCGGgaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 131208 0.67 0.662851
Target:  5'- uGCCuccgGAGCgGCgCUGCAgGCCCagGAgCCCg -3'
miRNA:   3'- gCGG----CUCG-UG-GACGUgCGGGa-CU-GGG- -5'
28914 5' -61.3 NC_006146.1 + 101036 0.73 0.313073
Target:  5'- gGCCucGguCCUGCAUGCCUgcgccugcgUGACCCg -3'
miRNA:   3'- gCGGcuCguGGACGUGCGGG---------ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 52843 0.72 0.356251
Target:  5'- gGCCGAGcCGCC-GC-CGCCCccGCCCg -3'
miRNA:   3'- gCGGCUC-GUGGaCGuGCGGGacUGGG- -5'
28914 5' -61.3 NC_006146.1 + 12921 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 22154 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 162363 0.71 0.41169
Target:  5'- gCGCCuuggagaugGAGCcCCUugGCGCGCCCgcgcccggGACCCc -3'
miRNA:   3'- -GCGG---------CUCGuGGA--CGUGCGGGa-------CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.