miRNA display CGI


Results 101 - 120 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 57376 0.67 0.662851
Target:  5'- gGCgGuGGCGCCgguggGCugGCCCcgcGACCg -3'
miRNA:   3'- gCGgC-UCGUGGa----CGugCGGGa--CUGGg -5'
28914 5' -61.3 NC_006146.1 + 149997 0.67 0.672581
Target:  5'- gGCCGgacucAGgGCCUcCACgaagGCCUUGGCCCg -3'
miRNA:   3'- gCGGC-----UCgUGGAcGUG----CGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 69443 0.67 0.679374
Target:  5'- aCGCUGAccccaccucugcGcCACCUGCACggcuuaaccaggauGCCCUGcauggccagGCCCg -3'
miRNA:   3'- -GCGGCU------------C-GUGGACGUG--------------CGGGAC---------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 169772 0.66 0.691941
Target:  5'- uCGCgGgGGCACCgGCGCGuggagaagaCCCUucuccGACCCa -3'
miRNA:   3'- -GCGgC-UCGUGGaCGUGC---------GGGA-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 135186 0.66 0.691941
Target:  5'- gGCCGGGgGCCggGUGC-CCCUGgguccgcuGCCCc -3'
miRNA:   3'- gCGGCUCgUGGa-CGUGcGGGAC--------UGGG- -5'
28914 5' -61.3 NC_006146.1 + 62180 0.68 0.584799
Target:  5'- gGCgGA-CACCaGCACGCCCacgGAgCCa -3'
miRNA:   3'- gCGgCUcGUGGaCGUGCGGGa--CUgGG- -5'
28914 5' -61.3 NC_006146.1 + 99218 0.69 0.555868
Target:  5'- gGCCGcGGCcUCgGCGCGCCC-GACCa -3'
miRNA:   3'- gCGGC-UCGuGGaCGUGCGGGaCUGGg -5'
28914 5' -61.3 NC_006146.1 + 101036 0.73 0.313073
Target:  5'- gGCCucGguCCUGCAUGCCUgcgccugcgUGACCCg -3'
miRNA:   3'- gCGGcuCguGGACGUGCGGG---------ACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 52843 0.72 0.356251
Target:  5'- gGCCGAGcCGCC-GC-CGCCCccGCCCg -3'
miRNA:   3'- gCGGCUC-GUGGaCGuGCGGGacUGGG- -5'
28914 5' -61.3 NC_006146.1 + 12921 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 22154 0.72 0.371545
Target:  5'- aGCCuGGUGCCucUGgAgGCCCUGGCCCc -3'
miRNA:   3'- gCGGcUCGUGG--ACgUgCGGGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 162363 0.71 0.41169
Target:  5'- gCGCCuuggagaugGAGCcCCUugGCGCGCCCgcgcccggGACCCc -3'
miRNA:   3'- -GCGG---------CUCGuGGA--CGUGCGGGa-------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 169383 0.71 0.420036
Target:  5'- gGCUG-GCGCCggGcCGCGCCCccGGCCCc -3'
miRNA:   3'- gCGGCuCGUGGa-C-GUGCGGGa-CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 44245 0.71 0.431891
Target:  5'- gGCCGGGCGgcgguguccauugccCCUGCGgGCCCcggggUGugCCc -3'
miRNA:   3'- gCGGCUCGU---------------GGACGUgCGGG-----ACugGG- -5'
28914 5' -61.3 NC_006146.1 + 156858 0.71 0.445675
Target:  5'- aGCCG-GCGCUUGCGCcuGCCCccGCCUg -3'
miRNA:   3'- gCGGCuCGUGGACGUG--CGGGacUGGG- -5'
28914 5' -61.3 NC_006146.1 + 168571 0.7 0.472165
Target:  5'- cCGCgGGGC-CCgGCGCGUgCCggggGACCCg -3'
miRNA:   3'- -GCGgCUCGuGGaCGUGCG-GGa---CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 47726 0.7 0.481171
Target:  5'- gCGCCcgGAGCucgucguccgggGCCUccucGCGCGCCCUGGCg- -3'
miRNA:   3'- -GCGG--CUCG------------UGGA----CGUGCGGGACUGgg -5'
28914 5' -61.3 NC_006146.1 + 160162 0.69 0.50867
Target:  5'- aGCCGcauGGCcCCgGCugGCUCUGgcuGCCCa -3'
miRNA:   3'- gCGGC---UCGuGGaCGugCGGGAC---UGGG- -5'
28914 5' -61.3 NC_006146.1 + 55049 0.69 0.517985
Target:  5'- gGCCGGG-GCCUGCcacagGCGgCCguaucgGACCCa -3'
miRNA:   3'- gCGGCUCgUGGACG-----UGCgGGa-----CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 130053 0.69 0.555868
Target:  5'- aGCCGGGCcuCCaagaGCGCcCCCUGcCCCu -3'
miRNA:   3'- gCGGCUCGu-GGa---CGUGcGGGACuGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.