miRNA display CGI


Results 21 - 40 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28914 5' -61.3 NC_006146.1 + 2239 0.66 0.724403
Target:  5'- uCGCCGcGCccCCUcaggccccacccgacGCGCGCUCgGGCCCc -3'
miRNA:   3'- -GCGGCuCGu-GGA---------------CGUGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 3171 0.66 0.724403
Target:  5'- uCGCCGcGCccCCUcaggccccacccgacGCGCGCUCgGGCCCc -3'
miRNA:   3'- -GCGGCuCGu-GGA---------------CGUGCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 125490 0.66 0.739408
Target:  5'- gGCCGGG-GCCU---CGCgCUGGCCCa -3'
miRNA:   3'- gCGGCUCgUGGAcguGCGgGACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 142339 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 145417 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 148495 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 151573 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 154651 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 157728 0.66 0.739408
Target:  5'- gGCCGGGCagGCCggGCAgGCCgggucuugGGCCUg -3'
miRNA:   3'- gCGGCUCG--UGGa-CGUgCGGga------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 161758 0.66 0.739408
Target:  5'- gGCUGAGguCCgaggGgGCGCCUgggcgggGGCCUg -3'
miRNA:   3'- gCGGCUCguGGa---CgUGCGGGa------CUGGG- -5'
28914 5' -61.3 NC_006146.1 + 120473 0.66 0.739408
Target:  5'- gGCCGcgaagcuugcGGCcuGCCUGC-CGuCCCUGGCggCCg -3'
miRNA:   3'- gCGGC----------UCG--UGGACGuGC-GGGACUG--GG- -5'
28914 5' -61.3 NC_006146.1 + 301 0.66 0.739408
Target:  5'- gGgCGGGC-CCgGCGCGCUCgccacGCCCa -3'
miRNA:   3'- gCgGCUCGuGGaCGUGCGGGac---UGGG- -5'
28914 5' -61.3 NC_006146.1 + 74064 0.66 0.729114
Target:  5'- gGCUGaAGCgggcccaACCUGCcCGCCCgucCCCa -3'
miRNA:   3'- gCGGC-UCG-------UGGACGuGCGGGacuGGG- -5'
28914 5' -61.3 NC_006146.1 + 17591 0.66 0.730053
Target:  5'- uGCUGGGCgACCUG---GCCCgGGCCUg -3'
miRNA:   3'- gCGGCUCG-UGGACgugCGGGaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 47685 0.66 0.730053
Target:  5'- uCGCCcuguaccAGCugCUGUccacCGCCCUGugCUc -3'
miRNA:   3'- -GCGGc------UCGugGACGu---GCGGGACugGG- -5'
28914 5' -61.3 NC_006146.1 + 110906 0.66 0.730053
Target:  5'- gGCCGcguuGGC-CUUGCACuCCaUGACCCc -3'
miRNA:   3'- gCGGC----UCGuGGACGUGcGGgACUGGG- -5'
28914 5' -61.3 NC_006146.1 + 35961 0.66 0.730053
Target:  5'- -uCCGGGCugACCUGCcguuGCGCag-GGCCCa -3'
miRNA:   3'- gcGGCUCG--UGGACG----UGCGggaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 63499 0.66 0.730053
Target:  5'- -cCCGuGCACgCcGCA-GCCCUGgACCCu -3'
miRNA:   3'- gcGGCuCGUG-GaCGUgCGGGAC-UGGG- -5'
28914 5' -61.3 NC_006146.1 + 122673 0.66 0.730053
Target:  5'- cCGCgCG-GCGCUcacccagGCGCGCCa-GGCCCu -3'
miRNA:   3'- -GCG-GCuCGUGGa------CGUGCGGgaCUGGG- -5'
28914 5' -61.3 NC_006146.1 + 206 0.66 0.738477
Target:  5'- gCGCCGGuGCcCCcGCgacgguccccgggGCGcCCCUGGCCUc -3'
miRNA:   3'- -GCGGCU-CGuGGaCG-------------UGC-GGGACUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.