Results 61 - 80 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28914 | 5' | -61.3 | NC_006146.1 | + | 3171 | 0.66 | 0.724403 |
Target: 5'- uCGCCGcGCccCCUcaggccccacccgacGCGCGCUCgGGCCCc -3' miRNA: 3'- -GCGGCuCGu-GGA---------------CGUGCGGGaCUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 2239 | 0.66 | 0.724403 |
Target: 5'- uCGCCGcGCccCCUcaggccccacccgacGCGCGCUCgGGCCCc -3' miRNA: 3'- -GCGGCuCGu-GGA---------------CGUGCGGGaCUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 153982 | 0.66 | 0.691941 |
Target: 5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3' miRNA: 3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 150904 | 0.66 | 0.691941 |
Target: 5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3' miRNA: 3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 147826 | 0.66 | 0.691941 |
Target: 5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3' miRNA: 3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 144748 | 0.66 | 0.691941 |
Target: 5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3' miRNA: 3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 141671 | 0.66 | 0.691941 |
Target: 5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3' miRNA: 3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 127602 | 0.66 | 0.691941 |
Target: 5'- gGCCGGGUgagagugacuaACCUGgGCGgCaCCgccGGCCCg -3' miRNA: 3'- gCGGCUCG-----------UGGACgUGC-G-GGa--CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 14776 | 0.66 | 0.691941 |
Target: 5'- gGCuCGGGCACCUGUugGCggCUGAg-- -3' miRNA: 3'- gCG-GCUCGUGGACGugCGg-GACUggg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 12094 | 0.66 | 0.689047 |
Target: 5'- gGCCGuGUGCCUGaaCACGCUCUucuucaggcugcggGACCg -3' miRNA: 3'- gCGGCuCGUGGAC--GUGCGGGA--------------CUGGg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 157060 | 0.66 | 0.691941 |
Target: 5'- cCGCCGGGguCCcuccgGC-CgGCCUgaugGACCCg -3' miRNA: 3'- -GCGGCUCguGGa----CGuG-CGGGa---CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 16170 | 0.66 | 0.701557 |
Target: 5'- aGCCGAGCGuugucuugCUGCugGCC---GCCCu -3' miRNA: 3'- gCGGCUCGUg-------GACGugCGGgacUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 1307 | 0.66 | 0.724403 |
Target: 5'- uCGCCGcGCccCCUcaggccccacccgacGCGCGCUCgGGCCCc -3' miRNA: 3'- -GCGGCuCGu-GGA---------------CGUGCGGGaCUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 116994 | 0.66 | 0.720621 |
Target: 5'- --aCGAGCGCgUggaGCGgGCCCUGgACCUg -3' miRNA: 3'- gcgGCUCGUGgA---CGUgCGGGAC-UGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 57092 | 0.66 | 0.720621 |
Target: 5'- --aCGAGCg---GCGCGUCCUGGCCa -3' miRNA: 3'- gcgGCUCGuggaCGUGCGGGACUGGg -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 105970 | 0.66 | 0.720621 |
Target: 5'- uGCCGAGC-CCU-CugGCuucucuaacCCUGgaGCCCa -3' miRNA: 3'- gCGGCUCGuGGAcGugCG---------GGAC--UGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 39927 | 0.66 | 0.720621 |
Target: 5'- gGUgGgggaAGUAUCUGgGCGCcuCCUGACCCu -3' miRNA: 3'- gCGgC----UCGUGGACgUGCG--GGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 15025 | 0.66 | 0.720621 |
Target: 5'- uGCCagggagGGGCGCCUGgccaGgGCCCgccgGGCCUg -3' miRNA: 3'- gCGG------CUCGUGGACg---UgCGGGa---CUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 113052 | 0.66 | 0.71112 |
Target: 5'- gGCCucGGGguCCacGUugGCCUUGACCUu -3' miRNA: 3'- gCGG--CUCguGGa-CGugCGGGACUGGG- -5' |
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28914 | 5' | -61.3 | NC_006146.1 | + | 21066 | 0.66 | 0.701557 |
Target: 5'- uCGCCGAgGC-CCUgGC-CGCCCacaccACCCg -3' miRNA: 3'- -GCGGCU-CGuGGA-CGuGCGGGac---UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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