Results 41 - 60 of 315 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 35301 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 35394 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 35487 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 35580 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 35673 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34372 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34279 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33908 | 0.66 | 0.651996 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcaCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa-GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 129633 | 0.66 | 0.651996 |
Target: 5'- gGUCCUcCGCGGGCgCGuGCUCCgcccgggaAugGCg -3' miRNA: 3'- -CGGGGcGCGCUCGgGC-CGAGG--------UugCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 44920 | 0.66 | 0.66158 |
Target: 5'- aGCCUCGCagccGCGAGUgCGGaC-CCAGCa- -3' miRNA: 3'- -CGGGGCG----CGCUCGgGCC-GaGGUUGcg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 122034 | 0.66 | 0.66158 |
Target: 5'- gGCCUgGCGCcuggaGGCCgaCGGCUUC-GCGCc -3' miRNA: 3'- -CGGGgCGCGc----UCGG--GCCGAGGuUGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33350 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33443 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33536 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33629 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33722 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33815 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34000 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34093 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34186 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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