miRNA display CGI


Results 81 - 100 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 2790 0.66 0.623187
Target:  5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3'
miRNA:   3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 2658 0.66 0.623187
Target:  5'- cGCCCCGCcggcccccccuGCaGGCgCCGGCcCCuccCGCc -3'
miRNA:   3'- -CGGGGCG-----------CGcUCG-GGCCGaGGuu-GCG- -5'
28915 3' -63.3 NC_006146.1 + 1858 0.66 0.623187
Target:  5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3'
miRNA:   3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 43822 0.66 0.632793
Target:  5'- cGCUCCGCcCuGGCCCuuucGGCUuCCcGCGCc -3'
miRNA:   3'- -CGGGGCGcGcUCGGG----CCGA-GGuUGCG- -5'
28915 3' -63.3 NC_006146.1 + 515 0.66 0.632793
Target:  5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3'
miRNA:   3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5'
28915 3' -63.3 NC_006146.1 + 44920 0.66 0.66158
Target:  5'- aGCCUCGCagccGCGAGUgCGGaC-CCAGCa- -3'
miRNA:   3'- -CGGGGCG----CGCUCGgGCC-GaGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 129633 0.66 0.651996
Target:  5'- gGUCCUcCGCGGGCgCGuGCUCCgcccgggaAugGCg -3'
miRNA:   3'- -CGGGGcGCGCUCGgGC-CGAGG--------UugCG- -5'
28915 3' -63.3 NC_006146.1 + 33908 0.66 0.651996
Target:  5'- aCCCgGCaGCG-GCCCGGCcaCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa-GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 42018 0.66 0.642398
Target:  5'- -gCCCGCGUucGGGCCCGcCUCCgcccccucuucGugGCc -3'
miRNA:   3'- cgGGGCGCG--CUCGGGCcGAGG-----------UugCG- -5'
28915 3' -63.3 NC_006146.1 + 3310 0.66 0.632793
Target:  5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3'
miRNA:   3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5'
28915 3' -63.3 NC_006146.1 + 2378 0.66 0.632793
Target:  5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3'
miRNA:   3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5'
28915 3' -63.3 NC_006146.1 + 926 0.66 0.623187
Target:  5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3'
miRNA:   3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 1446 0.66 0.632793
Target:  5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3'
miRNA:   3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5'
28915 3' -63.3 NC_006146.1 + 148733 0.67 0.594431
Target:  5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3'
miRNA:   3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5'
28915 3' -63.3 NC_006146.1 + 151811 0.67 0.594431
Target:  5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3'
miRNA:   3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5'
28915 3' -63.3 NC_006146.1 + 154889 0.67 0.594431
Target:  5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3'
miRNA:   3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5'
28915 3' -63.3 NC_006146.1 + 135665 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 135757 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 135850 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 135943 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.