Results 101 - 120 of 315 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 136687 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 105836 | 0.67 | 0.564948 |
Target: 5'- uGCCCCGCGCcgccGAGUagaCGcagugccGCUCCu-CGCa -3' miRNA: 3'- -CGGGGCGCG----CUCGg--GC-------CGAGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 53721 | 0.67 | 0.564948 |
Target: 5'- uCCCCGUccucuccGgGAGCCgCGGCUgcgCCGGgGCg -3' miRNA: 3'- cGGGGCG-------CgCUCGG-GCCGA---GGUUgCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 136872 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 135850 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 137337 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 136965 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 137430 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 151811 | 0.67 | 0.594431 |
Target: 5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3' miRNA: 3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 136315 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 154889 | 0.67 | 0.594431 |
Target: 5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3' miRNA: 3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 136408 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 136501 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 135572 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 135665 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 135943 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 136036 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 136129 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 136222 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 137244 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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