Results 81 - 100 of 315 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 13546 | 0.69 | 0.456641 |
Target: 5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3' miRNA: 3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 16624 | 0.69 | 0.456641 |
Target: 5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3' miRNA: 3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 19702 | 0.69 | 0.456641 |
Target: 5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3' miRNA: 3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 22780 | 0.69 | 0.456641 |
Target: 5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3' miRNA: 3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 25858 | 0.69 | 0.456641 |
Target: 5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3' miRNA: 3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 61912 | 0.69 | 0.474123 |
Target: 5'- aGCCCCugaGCGUGGGUCC--CUCCGAgGCc -3' miRNA: 3'- -CGGGG---CGCGCUCGGGccGAGGUUgCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 93588 | 0.69 | 0.474123 |
Target: 5'- aGCCUgggcaUGCGCGAcccGCCgGGCUCCuGGgGCu -3' miRNA: 3'- -CGGG-----GCGCGCU---CGGgCCGAGG-UUgCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 127141 | 0.69 | 0.474123 |
Target: 5'- uGCUCCGCGUgGAGCUggaCGGCgUCAuGCGCg -3' miRNA: 3'- -CGGGGCGCG-CUCGG---GCCGaGGU-UGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 53884 | 0.69 | 0.439511 |
Target: 5'- cGCCCCcguaggGCGUagcccagguccaGGGCCC-GCUCCAcGCGCu -3' miRNA: 3'- -CGGGG------CGCG------------CUCGGGcCGAGGU-UGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 159270 | 0.69 | 0.431085 |
Target: 5'- cGCCgCCaCGCGGGCCuCGGggCCcuCGCa -3' miRNA: 3'- -CGG-GGcGCGCUCGG-GCCgaGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 110817 | 0.69 | 0.439511 |
Target: 5'- gGCCCgGCGauuGCCCGuaGCUCCAcgggacgaggcgGCGCc -3' miRNA: 3'- -CGGGgCGCgcuCGGGC--CGAGGU------------UGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 11850 | 0.69 | 0.445465 |
Target: 5'- gGCCCUGCuucucgggcuugggGCGGGCCCgacguugacuGGCaCCAACGg -3' miRNA: 3'- -CGGGGCG--------------CGCUCGGG----------CCGaGGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 125496 | 0.69 | 0.456641 |
Target: 5'- gGCCUCGCGCuGGCCCa---CCGACGUg -3' miRNA: 3'- -CGGGGCGCGcUCGGGccgaGGUUGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 118055 | 0.69 | 0.46534 |
Target: 5'- cCCCCGgGCGggggcggcggcGGCUCGGC-CCucCGCa -3' miRNA: 3'- cGGGGCgCGC-----------UCGGGCCGaGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 32934 | 0.69 | 0.454048 |
Target: 5'- gGCCCC-CGgGAgGCCCGGCcgcgaUCCucccccgugaacggGGCGCg -3' miRNA: 3'- -CGGGGcGCgCU-CGGGCCG-----AGG--------------UUGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 80344 | 0.69 | 0.474123 |
Target: 5'- cUCCCGgGUcuucucccGGGCCCuGCUCCAcCGCu -3' miRNA: 3'- cGGGGCgCG--------CUCGGGcCGAGGUuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 51588 | 0.69 | 0.431085 |
Target: 5'- gGgCCCGgGgGAGCCagaGGggCCAGCGUa -3' miRNA: 3'- -CgGGGCgCgCUCGGg--CCgaGGUUGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 10867 | 0.69 | 0.48299 |
Target: 5'- gGCaucaCCGUG-GAGCCgGGCUUCAGCa- -3' miRNA: 3'- -CGg---GGCGCgCUCGGgCCGAGGUUGcg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 42960 | 0.69 | 0.486558 |
Target: 5'- cGCCCCgggcacgcugaGCGCGgaguuugugggcagcAGCCCGGCgCC--CGCa -3' miRNA: 3'- -CGGGG-----------CGCGC---------------UCGGGCCGaGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 93995 | 0.69 | 0.431085 |
Target: 5'- aGCCCCGCG-GucaccUCUGGCUCCcACGUg -3' miRNA: 3'- -CGGGGCGCgCuc---GGGCCGAGGuUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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