miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 15346 1.11 0.000557
Target:  5'- cGCCCCGCGCGAGCCCGGCUCCAACGCc -3'
miRNA:   3'- -CGGGGCGCGCUCGGGCCGAGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 161978 0.8 0.088865
Target:  5'- cGCCCCGUGgGAGaCCGGCUCCA-CGg -3'
miRNA:   3'- -CGGGGCGCgCUCgGGCCGAGGUuGCg -5'
28915 3' -63.3 NC_006146.1 + 161777 0.8 0.088865
Target:  5'- cGCCCCGUGgGAGaCCGGCUCCA-CGg -3'
miRNA:   3'- -CGGGGCGCgCUCgGGCCGAGGUuGCg -5'
28915 3' -63.3 NC_006146.1 + 161911 0.8 0.088865
Target:  5'- cGCCCCGUGgGAGaCCGGCUCCA-CGg -3'
miRNA:   3'- -CGGGGCGCgCUCgGGCCGAGGUuGCg -5'
28915 3' -63.3 NC_006146.1 + 161844 0.8 0.088865
Target:  5'- cGCCCCGUGgGAGaCCGGCUCCA-CGg -3'
miRNA:   3'- -CGGGGCGCgCUCgGGCCGAGGUuGCg -5'
28915 3' -63.3 NC_006146.1 + 57396 0.79 0.105714
Target:  5'- gGCCCCGCGacCGuGCCCGGC--CGACGCa -3'
miRNA:   3'- -CGGGGCGC--GCuCGGGCCGagGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 130027 0.79 0.114943
Target:  5'- gGCCCCGgcuccgucuccggacCGCGAGCCgGGCcUCCAagaGCGCc -3'
miRNA:   3'- -CGGGGC---------------GCGCUCGGgCCG-AGGU---UGCG- -5'
28915 3' -63.3 NC_006146.1 + 157333 0.78 0.119542
Target:  5'- aGCCCCcggccugcuuGCGC-AGCCCGGCgcCCGGCGCc -3'
miRNA:   3'- -CGGGG----------CGCGcUCGGGCCGa-GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 58021 0.78 0.12863
Target:  5'- gGCCuUCGCGCaGAGCCCGGC-CUAcgaGCGCa -3'
miRNA:   3'- -CGG-GGCGCG-CUCGGGCCGaGGU---UGCG- -5'
28915 3' -63.3 NC_006146.1 + 71536 0.77 0.145203
Target:  5'- gGCCUcaaCGCGCG-GCCCgGGCgCCGACGCu -3'
miRNA:   3'- -CGGG---GCGCGCuCGGG-CCGaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 26169 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 13858 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 20013 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 23091 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 16936 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 29247 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 117169 0.76 0.170464
Target:  5'- cGCCCCG-GCGcAGCCgCGGCUCCcggagaggacggggAACGUg -3'
miRNA:   3'- -CGGGGCgCGC-UCGG-GCCGAGG--------------UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 67315 0.76 0.184299
Target:  5'- gGCCacguCCGCGCuGAGCCCGGC-CCAG-GCc -3'
miRNA:   3'- -CGG----GGCGCG-CUCGGGCCGaGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 117570 0.76 0.186042
Target:  5'- cGCCCCGCGgccgccgggccuccuCGGGCUCGGaCUCCGGC-Ca -3'
miRNA:   3'- -CGGGGCGC---------------GCUCGGGCC-GAGGUUGcG- -5'
28915 3' -63.3 NC_006146.1 + 167635 0.75 0.202391
Target:  5'- gGUCCCGCG-GGGCCCGGCgcgugCCGggggcccggggGCGUg -3'
miRNA:   3'- -CGGGGCGCgCUCGGGCCGa----GGU-----------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.