miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 169499 0.75 0.207149
Target:  5'- gGUCCCGCG-GGGCCCGGCgcgugCCGggggacccggggGCGUg -3'
miRNA:   3'- -CGGGGCGCgCUCGGGCCGa----GGU------------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 168567 0.75 0.207149
Target:  5'- gGUCCCGCG-GGGCCCGGCgcgugCCGggggacccggggGCGUg -3'
miRNA:   3'- -CGGGGCGCgCUCGGGCCGa----GGU------------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 170430 0.75 0.207149
Target:  5'- gGUCCCGCG-GGGCCCGGCgcgugCCGggggacccggggGCGUg -3'
miRNA:   3'- -CGGGGCGCgCUCGGGCCGa----GGU------------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 42683 0.75 0.207149
Target:  5'- uCCCCGCGcCGAaagagcgucugGCCCGGCgCCGcgGCGCc -3'
miRNA:   3'- cGGGGCGC-GCU-----------CGGGCCGaGGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 156347 0.75 0.212003
Target:  5'- cGCCCCGaaaGCG-GCCCagcaGCUCCAGgGCc -3'
miRNA:   3'- -CGGGGCg--CGCuCGGGc---CGAGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 47645 0.75 0.216954
Target:  5'- cGUCUCuggcCGCG-GCCCGGC-CCAGCGCg -3'
miRNA:   3'- -CGGGGc---GCGCuCGGGCCGaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 126496 0.74 0.232405
Target:  5'- aGCCCCucgaggaagGCGcCGuGCCCGGCcCCAcACGCc -3'
miRNA:   3'- -CGGGG---------CGC-GCuCGGGCCGaGGU-UGCG- -5'
28915 3' -63.3 NC_006146.1 + 154984 0.73 0.260206
Target:  5'- gGCCUCGCGCaGGGCCCGGCa-CAGaaguUGCu -3'
miRNA:   3'- -CGGGGCGCG-CUCGGGCCGagGUU----GCG- -5'
28915 3' -63.3 NC_006146.1 + 24058 0.73 0.260206
Target:  5'- gGCCCCGaGCcaGGCCCgGGCUCUAcgcugGCGCg -3'
miRNA:   3'- -CGGGGCgCGc-UCGGG-CCGAGGU-----UGCG- -5'
28915 3' -63.3 NC_006146.1 + 156579 0.73 0.262543
Target:  5'- gGCCCUGCGUGAGUucuccagcaggugcgCCaGCUCCAgggacaggGCGCu -3'
miRNA:   3'- -CGGGGCGCGCUCG---------------GGcCGAGGU--------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 61919 0.72 0.290658
Target:  5'- -aCCCG-GCGGGCCaucaggGGCUCCAGgGCc -3'
miRNA:   3'- cgGGGCgCGCUCGGg-----CCGAGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 142111 0.72 0.297074
Target:  5'- uGCCCCaaGUGAGCCCucGGCcCCAGgGUa -3'
miRNA:   3'- -CGGGGcgCGCUCGGG--CCGaGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 55478 0.72 0.302942
Target:  5'- gGCCgCGgGCGAgaacgagGCCCGGCcgCCAGCuGCc -3'
miRNA:   3'- -CGGgGCgCGCU-------CGGGCCGa-GGUUG-CG- -5'
28915 3' -63.3 NC_006146.1 + 47760 0.72 0.303599
Target:  5'- cGCCCUG-GCGAGUaCGGCcUCCAGgGCc -3'
miRNA:   3'- -CGGGGCgCGCUCGgGCCG-AGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 168323 0.72 0.309565
Target:  5'- gGCuCCCGaggGCGgggccggGGCCUGGCgggggCCAGCGCg -3'
miRNA:   3'- -CG-GGGCg--CGC-------UCGGGCCGa----GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 169255 0.72 0.309565
Target:  5'- gGCuCCCGaggGCGgggccggGGCCUGGCgggggCCAGCGCg -3'
miRNA:   3'- -CG-GGGCg--CGC-------UCGGGCCGa----GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 170186 0.72 0.309565
Target:  5'- gGCuCCCGaggGCGgggccggGGCCUGGCgggggCCAGCGCg -3'
miRNA:   3'- -CG-GGGCg--CGC-------UCGGGCCGa----GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 167391 0.72 0.309565
Target:  5'- gGCuCCCGaggGCGgggccggGGCCUGGCgggggCCAGCGCg -3'
miRNA:   3'- -CG-GGGCg--CGC-------UCGGGCCGa----GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 104111 0.72 0.310234
Target:  5'- uGCgCCGCcUGGGCCCGGUgUCCAGguCGCa -3'
miRNA:   3'- -CGgGGCGcGCUCGGGCCG-AGGUU--GCG- -5'
28915 3' -63.3 NC_006146.1 + 117099 0.72 0.314943
Target:  5'- aGCCCCccgcuauggacgccGCGCGGGCCgaGGCccucgUCCGGCGa -3'
miRNA:   3'- -CGGGG--------------CGCGCUCGGg-CCG-----AGGUUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.