miRNA display CGI


Results 41 - 60 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 33142 0.72 0.323833
Target:  5'- uGCCCCGCuccgggugggggGUG-GCCCGGCUgggcaCCGcCGCg -3'
miRNA:   3'- -CGGGGCG------------CGCuCGGGCCGA-----GGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 46774 0.72 0.323833
Target:  5'- aCCCCGgGCGGauGgCUGGCcggCCGGCGCg -3'
miRNA:   3'- cGGGGCgCGCU--CgGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 2076 0.72 0.330096
Target:  5'- uGCCCC-CGCGAggguccccgggccGCCCcggGGCUCCcccGCGCc -3'
miRNA:   3'- -CGGGGcGCGCU-------------CGGG---CCGAGGu--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 1144 0.72 0.330096
Target:  5'- uGCCCC-CGCGAggguccccgggccGCCCcggGGCUCCcccGCGCc -3'
miRNA:   3'- -CGGGGcGCGCU-------------CGGG---CCGAGGu--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 3008 0.72 0.330096
Target:  5'- uGCCCC-CGCGAggguccccgggccGCCCcggGGCUCCcccGCGCc -3'
miRNA:   3'- -CGGGGcGCGCU-------------CGGG---CCGAGGu--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 33266 0.72 0.330797
Target:  5'- uGCCCCGCuccgggugggggGUG-GCCCGGCUgggcaCCGcuGCGCc -3'
miRNA:   3'- -CGGGGCG------------CGCuCGGGCCGA-----GGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 157565 0.72 0.330797
Target:  5'- gGCCuCCGCGUaGGCCgCGGCcgacUCCAcCGCc -3'
miRNA:   3'- -CGG-GGCGCGcUCGG-GCCG----AGGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 295 0.71 0.337871
Target:  5'- -aCCCGgggGCGGGCCCGGCgcgcucgCCA-CGCc -3'
miRNA:   3'- cgGGGCg--CGCUCGGGCCGa------GGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 45990 0.71 0.337871
Target:  5'- cGCCCCGCGUGuaGGCCCGcCUgaCAaagucGCGCa -3'
miRNA:   3'- -CGGGGCGCGC--UCGGGCcGAg-GU-----UGCG- -5'
28915 3' -63.3 NC_006146.1 + 103577 0.71 0.352347
Target:  5'- -gCCCGgGCcuGGGCCgGGCU-CAGCGCg -3'
miRNA:   3'- cgGGGCgCG--CUCGGgCCGAgGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 28936 0.71 0.352347
Target:  5'- aGCCCCGCcccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG---CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 138993 0.71 0.359747
Target:  5'- uGCCCUuuuGCGCucuagaggGAGCCCGGCUuuuucccuuUCGGCGUu -3'
miRNA:   3'- -CGGGG---CGCG--------CUCGGGCCGA---------GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 115230 0.71 0.359747
Target:  5'- -gCCCGUGCuGGccuucaacgccGCCUGGCUCCGGCuGCu -3'
miRNA:   3'- cgGGGCGCG-CU-----------CGGGCCGAGGUUG-CG- -5'
28915 3' -63.3 NC_006146.1 + 99860 0.71 0.362738
Target:  5'- uCCCCGCGCGGcguacggauguagacGUCCaGCugaUCCGGCGCc -3'
miRNA:   3'- cGGGGCGCGCU---------------CGGGcCG---AGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 50870 0.71 0.3665
Target:  5'- uCUCCGCGCGGggucuguGCCCGGa-CUGGCGCg -3'
miRNA:   3'- cGGGGCGCGCU-------CGGGCCgaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 111849 0.71 0.367256
Target:  5'- cGCCCUGCGUGucGGCCCGcuGCgcccucaccgCCAGCGg -3'
miRNA:   3'- -CGGGGCGCGC--UCGGGC--CGa---------GGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 169141 0.71 0.374872
Target:  5'- gGCCgCGCGUGGGgauggCCGGCgggaggggCCGGCGCc -3'
miRNA:   3'- -CGGgGCGCGCUCg----GGCCGa-------GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 168209 0.71 0.374872
Target:  5'- gGCCgCGCGUGGGgauggCCGGCgggaggggCCGGCGCc -3'
miRNA:   3'- -CGGgGCGCGCUCg----GGCCGa-------GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 167277 0.71 0.374872
Target:  5'- gGCCgCGCGUGGGgauggCCGGCgggaggggCCGGCGCc -3'
miRNA:   3'- -CGGgGCGCGCUCg----GGCCGa-------GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 170073 0.71 0.374872
Target:  5'- gGCCgCGCGUGGGgauggCCGGCgggaggggCCGGCGCc -3'
miRNA:   3'- -CGGgGCGCGCUCg----GGCCGa-------GGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.