miRNA display CGI


Results 61 - 80 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 723 0.71 0.377948
Target:  5'- gGCCCCGCccucGgGAGCCCccucagcccccggccGGCgCCGccGCGCg -3'
miRNA:   3'- -CGGGGCG----CgCUCGGG---------------CCGaGGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 167884 0.71 0.377948
Target:  5'- aGCCCCgGgGCG-GCCCggggacccucgcgggGGCaCCGGCGCg -3'
miRNA:   3'- -CGGGG-CgCGCuCGGG---------------CCGaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 2586 0.71 0.377948
Target:  5'- gGCCCCGCccucGgGAGCCCccucagcccccggccGGCgCCGccGCGCg -3'
miRNA:   3'- -CGGGGCG----CgCUCGGG---------------CCGaGGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 169748 0.71 0.377948
Target:  5'- aGCCCCgGgGCG-GCCCggggacccucgcgggGGCaCCGGCGCg -3'
miRNA:   3'- -CGGGG-CgCGCuCGGG---------------CCGaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 3518 0.71 0.377948
Target:  5'- gGCCCCGCccucGgGAGCCCccucagcccccggccGGCgCCGccGCGCg -3'
miRNA:   3'- -CGGGGCG----CgCUCGGG---------------CCGaGGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 168816 0.71 0.377948
Target:  5'- aGCCCCgGgGCG-GCCCggggacccucgcgggGGCaCCGGCGCg -3'
miRNA:   3'- -CGGGG-CgCGCuCGGG---------------CCGaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 1654 0.71 0.377948
Target:  5'- gGCCCCGCccucGgGAGCCCccucagcccccggccGGCgCCGccGCGCg -3'
miRNA:   3'- -CGGGGCG----CgCUCGGG---------------CCGaGGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 62996 0.7 0.382594
Target:  5'- gGCCCUGgGCuccggGAGUCUGGCgggugcCCGACGUa -3'
miRNA:   3'- -CGGGGCgCG-----CUCGGGCCGa-----GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 156738 0.7 0.390421
Target:  5'- aGCCUgGCGCaGAcGCUCaGCUCCAcggccaGCGCg -3'
miRNA:   3'- -CGGGgCGCG-CU-CGGGcCGAGGU------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 15928 0.7 0.398352
Target:  5'- gGCCCUGCGCGAGgCCGuGCUgaCCGu--- -3'
miRNA:   3'- -CGGGGCGCGCUCgGGC-CGA--GGUugcg -5'
28915 3' -63.3 NC_006146.1 + 165989 0.7 0.398352
Target:  5'- -aCCCGacaGCGAggGUCCGGCUCUgucaccaggcGGCGCa -3'
miRNA:   3'- cgGGGCg--CGCU--CGGGCCGAGG----------UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 8521 0.7 0.405577
Target:  5'- gGUCCCggGCGCGGGCgCgccaaggGGCUCCAucuccaagGCGCu -3'
miRNA:   3'- -CGGGG--CGCGCUCGgG-------CCGAGGU--------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 129805 0.7 0.406385
Target:  5'- gGCCCUGCac--GCCUGGCUCCccuCGCu -3'
miRNA:   3'- -CGGGGCGcgcuCGGGCCGAGGuu-GCG- -5'
28915 3' -63.3 NC_006146.1 + 123248 0.7 0.406385
Target:  5'- gGCCgCCGCGCuGGGCCgGGCcgcggCCAgagACGg -3'
miRNA:   3'- -CGG-GGCGCG-CUCGGgCCGa----GGU---UGCg -5'
28915 3' -63.3 NC_006146.1 + 114171 0.7 0.420273
Target:  5'- cGUCCCGCGCGAaUUCGGCcCCcugagaaauauuuaGACGCc -3'
miRNA:   3'- -CGGGGCGCGCUcGGGCCGaGG--------------UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 55760 0.7 0.422753
Target:  5'- cGCCCgGCgGCGGGCCaggGGCagcgaggCCAccACGCu -3'
miRNA:   3'- -CGGGgCG-CGCUCGGg--CCGa------GGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 55368 0.7 0.422753
Target:  5'- cGCCaCCGCGCGcgggacGCCCGGggcaCCGAgGCc -3'
miRNA:   3'- -CGG-GGCGCGCu-----CGGGCCga--GGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 43652 0.7 0.422753
Target:  5'- cGCCUgGgGagagGGGCCCGGCUCgCAuuCGCu -3'
miRNA:   3'- -CGGGgCgCg---CUCGGGCCGAG-GUu-GCG- -5'
28915 3' -63.3 NC_006146.1 + 93995 0.69 0.431085
Target:  5'- aGCCCCGCG-GucaccUCUGGCUCCcACGUg -3'
miRNA:   3'- -CGGGGCGCgCuc---GGGCCGAGGuUGCG- -5'
28915 3' -63.3 NC_006146.1 + 51588 0.69 0.431085
Target:  5'- gGgCCCGgGgGAGCCagaGGggCCAGCGUa -3'
miRNA:   3'- -CgGGGCgCgCUCGGg--CCgaGGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.