miRNA display CGI


Results 81 - 100 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 51588 0.69 0.431085
Target:  5'- gGgCCCGgGgGAGCCagaGGggCCAGCGUa -3'
miRNA:   3'- -CgGGGCgCgCUCGGg--CCgaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 53884 0.69 0.439511
Target:  5'- cGCCCCcguaggGCGUagcccagguccaGGGCCC-GCUCCAcGCGCu -3'
miRNA:   3'- -CGGGG------CGCG------------CUCGGGcCGAGGU-UGCG- -5'
28915 3' -63.3 NC_006146.1 + 110817 0.69 0.439511
Target:  5'- gGCCCgGCGauuGCCCGuaGCUCCAcgggacgaggcgGCGCc -3'
miRNA:   3'- -CGGGgCGCgcuCGGGC--CGAGGU------------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 11850 0.69 0.445465
Target:  5'- gGCCCUGCuucucgggcuugggGCGGGCCCgacguugacuGGCaCCAACGg -3'
miRNA:   3'- -CGGGGCG--------------CGCUCGGG----------CCGaGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 4181 0.69 0.448031
Target:  5'- uGCCCCGaGaCGGGCUCGGCgggaaCCGGCu- -3'
miRNA:   3'- -CGGGGCgC-GCUCGGGCCGa----GGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 32934 0.69 0.454048
Target:  5'- gGCCCC-CGgGAgGCCCGGCcgcgaUCCucccccgugaacggGGCGCg -3'
miRNA:   3'- -CGGGGcGCgCU-CGGGCCG-----AGG--------------UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 22780 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 13546 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 16624 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 125496 0.69 0.456641
Target:  5'- gGCCUCGCGCuGGCCCa---CCGACGUg -3'
miRNA:   3'- -CGGGGCGCGcUCGGGccgaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 25858 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 19702 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 118055 0.69 0.46534
Target:  5'- cCCCCGgGCGggggcggcggcGGCUCGGC-CCucCGCa -3'
miRNA:   3'- cGGGGCgCGC-----------UCGGGCCGaGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 61912 0.69 0.474123
Target:  5'- aGCCCCugaGCGUGGGUCC--CUCCGAgGCc -3'
miRNA:   3'- -CGGGG---CGCGCUCGGGccGAGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 93588 0.69 0.474123
Target:  5'- aGCCUgggcaUGCGCGAcccGCCgGGCUCCuGGgGCu -3'
miRNA:   3'- -CGGG-----GCGCGCU---CGGgCCGAGG-UUgCG- -5'
28915 3' -63.3 NC_006146.1 + 127141 0.69 0.474123
Target:  5'- uGCUCCGCGUgGAGCUggaCGGCgUCAuGCGCg -3'
miRNA:   3'- -CGGGGCGCG-CUCGG---GCCGaGGU-UGCG- -5'
28915 3' -63.3 NC_006146.1 + 80344 0.69 0.474123
Target:  5'- cUCCCGgGUcuucucccGGGCCCuGCUCCAcCGCu -3'
miRNA:   3'- cGGGGCgCG--------CUCGGGcCGAGGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 10867 0.69 0.48299
Target:  5'- gGCaucaCCGUG-GAGCCgGGCUUCAGCa- -3'
miRNA:   3'- -CGg---GGCGCgCUCGGgCCGAGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 170471 0.69 0.48299
Target:  5'- uGUCCCGCgacccgagggGCGAGCggggggcuuccCCGGacccCCAGCGCg -3'
miRNA:   3'- -CGGGGCG----------CGCUCG-----------GGCCga--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 42960 0.69 0.486558
Target:  5'- cGCCCCgggcacgcugaGCGCGgaguuugugggcagcAGCCCGGCgCC--CGCa -3'
miRNA:   3'- -CGGGG-----------CGCGC---------------UCGGGCCGaGGuuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.