miRNA display CGI


Results 101 - 120 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 41660 0.68 0.491037
Target:  5'- cCCUCGCGCcucaccuGGGCCCgucccugcuGGCUCuuuCAGCGCu -3'
miRNA:   3'- cGGGGCGCG-------CUCGGG---------CCGAG---GUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 47839 0.68 0.491037
Target:  5'- gGCCCCGCaggacGCGucccuGGaCCCGGCgucuguuUCCAAgGCc -3'
miRNA:   3'- -CGGGGCG-----CGC-----UC-GGGCCG-------AGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 155853 0.68 0.491935
Target:  5'- uGCCuCCuCGCaGGCCCGGCgggcccuggCCAgGCGCc -3'
miRNA:   3'- -CGG-GGcGCGcUCGGGCCGa--------GGU-UGCG- -5'
28915 3' -63.3 NC_006146.1 + 66711 0.68 0.491935
Target:  5'- gGCCCCGUGgGGGCgcagaCGGC-CCuGCGa -3'
miRNA:   3'- -CGGGGCGCgCUCGg----GCCGaGGuUGCg -5'
28915 3' -63.3 NC_006146.1 + 92224 0.68 0.491935
Target:  5'- gGCUgCUGCugggggGCGGGCCCGGC-CUGugGCu -3'
miRNA:   3'- -CGG-GGCG------CGCUCGGGCCGaGGUugCG- -5'
28915 3' -63.3 NC_006146.1 + 112889 0.68 0.500051
Target:  5'- gGCUCUGCGCGAaggccgaGaCCCGGgcCUCCAGCu- -3'
miRNA:   3'- -CGGGGCGCGCU-------C-GGGCC--GAGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 114339 0.68 0.500956
Target:  5'- cGCCCCugacggaggugGaCGgGGGCCUGGC-CCGcgugACGCg -3'
miRNA:   3'- -CGGGG-----------C-GCgCUCGGGCCGaGGU----UGCG- -5'
28915 3' -63.3 NC_006146.1 + 3382 0.68 0.500956
Target:  5'- gGCCggggGCGCG-GCCCGGCgCCAGCc- -3'
miRNA:   3'- -CGGgg--CGCGCuCGGGCCGaGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 2450 0.68 0.500956
Target:  5'- gGCCggggGCGCG-GCCCGGCgCCAGCc- -3'
miRNA:   3'- -CGGgg--CGCGCuCGGGCCGaGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 1518 0.68 0.500956
Target:  5'- gGCCggggGCGCG-GCCCGGCgCCAGCc- -3'
miRNA:   3'- -CGGgg--CGCGCuCGGGCCGaGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 587 0.68 0.500956
Target:  5'- gGCCggggGCGCG-GCCCGGCgCCAGCc- -3'
miRNA:   3'- -CGGgg--CGCGCuCGGGCCGaGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 72480 0.68 0.500956
Target:  5'- gGUUCUGgGCGcuuccccguGCCUGGCUgCAGCGCc -3'
miRNA:   3'- -CGGGGCgCGCu--------CGGGCCGAgGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 4375 0.68 0.500956
Target:  5'- gGCCCCGCGgGcuCCCcaggCCGACGCc -3'
miRNA:   3'- -CGGGGCGCgCucGGGccgaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 67685 0.68 0.500956
Target:  5'- aUCUCGCGCGAGuCCCGccgcaGCUUUucGCGCg -3'
miRNA:   3'- cGGGGCGCGCUC-GGGC-----CGAGGu-UGCG- -5'
28915 3' -63.3 NC_006146.1 + 160019 0.68 0.509137
Target:  5'- gGCCuuGaCGUugaugcuGaAGCCCGGCUCCAcggugAUGCc -3'
miRNA:   3'- -CGGggC-GCG-------C-UCGGGCCGAGGU-----UGCG- -5'
28915 3' -63.3 NC_006146.1 + 118573 0.68 0.510049
Target:  5'- cGCCCCGgGCac-CCCGGC-CC-ACGUc -3'
miRNA:   3'- -CGGGGCgCGcucGGGCCGaGGuUGCG- -5'
28915 3' -63.3 NC_006146.1 + 56209 0.68 0.510049
Target:  5'- gGUCUCGCGgaCGAGCCgCGaGCcgUCCAGCGg -3'
miRNA:   3'- -CGGGGCGC--GCUCGG-GC-CG--AGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 111014 0.68 0.510049
Target:  5'- gGCCagCGUGCuGGCCCGcgcggcguGCUCCucGCGCa -3'
miRNA:   3'- -CGGg-GCGCGcUCGGGC--------CGAGGu-UGCG- -5'
28915 3' -63.3 NC_006146.1 + 27770 0.68 0.510049
Target:  5'- uGCCCCGUcgagaaggGUGGGUcucaggucaCCGGCUCCAggaaacuaacaAUGCu -3'
miRNA:   3'- -CGGGGCG--------CGCUCG---------GGCCGAGGU-----------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 128873 0.68 0.510049
Target:  5'- -aCCgGCGUGAGCCCGGgC-CCAGagggaguaGCu -3'
miRNA:   3'- cgGGgCGCGCUCGGGCC-GaGGUUg-------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.