miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 35766 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35394 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35301 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35208 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35115 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 34465 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 34558 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 34651 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 34744 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 34837 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35022 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 137978 0.66 0.652955
Target:  5'- gGCCUCcCGgGGGCCCGGCggggugggggguGCGCc -3'
miRNA:   3'- -CGGGGcGCgCUCGGGCCGaggu--------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 120044 0.66 0.651996
Target:  5'- aCCCCGCGCgGAGaCUGGUggcgCUgcuGCGCc -3'
miRNA:   3'- cGGGGCGCG-CUCgGGCCGa---GGu--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 53374 0.66 0.651996
Target:  5'- gGCCCgGCGCuuGCUCGcGUUCCugcCGUu -3'
miRNA:   3'- -CGGGgCGCGcuCGGGC-CGAGGuu-GCG- -5'
28915 3' -63.3 NC_006146.1 + 144757 0.66 0.651996
Target:  5'- cCCCCGUGCucuuuccgaccGGGcCCCGGUgccuuUCCAugGa -3'
miRNA:   3'- cGGGGCGCG-----------CUC-GGGCCG-----AGGUugCg -5'
28915 3' -63.3 NC_006146.1 + 91795 0.66 0.651996
Target:  5'- uUCCUGCaGCucAGCCCcauCUCCAGCGCa -3'
miRNA:   3'- cGGGGCG-CGc-UCGGGcc-GAGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 33908 0.66 0.651996
Target:  5'- aCCCgGCaGCG-GCCCGGCcaCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa-GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 129633 0.66 0.651996
Target:  5'- gGUCCUcCGCGGGCgCGuGCUCCgcccgggaAugGCg -3'
miRNA:   3'- -CGGGGcGCGCUCGgGC-CGAGG--------UugCG- -5'
28915 3' -63.3 NC_006146.1 + 129035 0.66 0.651996
Target:  5'- gGCaCgGCGC-AGCCCGaGCUgggcccagacgCCGGCGCa -3'
miRNA:   3'- -CGgGgCGCGcUCGGGC-CGA-----------GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 114230 0.66 0.648158
Target:  5'- aGCCCCa-GgGGGCCCGGCaccucagggagggCCAGCu- -3'
miRNA:   3'- -CGGGGcgCgCUCGGGCCGa------------GGUUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.