miRNA display CGI


Results 41 - 60 of 315 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 78640 0.66 0.642398
Target:  5'- aGCCCCagGC-CGGGCCCGcCccCCAGCaGCa -3'
miRNA:   3'- -CGGGG--CGcGCUCGGGCcGa-GGUUG-CG- -5'
28915 3' -63.3 NC_006146.1 + 78610 0.66 0.642398
Target:  5'- aGCCCCagGC-CGGGCCCGcCccCCAGCaGCa -3'
miRNA:   3'- -CGGGG--CGcGCUCGGGCcGa-GGUUG-CG- -5'
28915 3' -63.3 NC_006146.1 + 42018 0.66 0.642398
Target:  5'- -gCCCGCGUucGGGCCCGcCUCCgcccccucuucGugGCc -3'
miRNA:   3'- cgGGGCGCG--CUCGGGCcGAGG-----------UugCG- -5'
28915 3' -63.3 NC_006146.1 + 146625 0.66 0.642398
Target:  5'- aGCCCC-CGgccagggucaCGAgGCCUGGgUCCAugGUc -3'
miRNA:   3'- -CGGGGcGC----------GCU-CGGGCCgAGGUugCG- -5'
28915 3' -63.3 NC_006146.1 + 78878 0.66 0.642398
Target:  5'- aGCCCCagGC-CGGGCCCGcCccCCAGCaGCa -3'
miRNA:   3'- -CGGGG--CGcGCUCGGGCcGa-GGUUG-CG- -5'
28915 3' -63.3 NC_006146.1 + 78848 0.66 0.642398
Target:  5'- aGCCCCagGC-CGGGCCCGcCccCCAGCaGCa -3'
miRNA:   3'- -CGGGG--CGcGCUCGGGCcGa-GGUUG-CG- -5'
28915 3' -63.3 NC_006146.1 + 78790 0.66 0.642398
Target:  5'- aGCCCCagGC-CGGGCCCGcCccCCAGCaGCa -3'
miRNA:   3'- -CGGGG--CGcGCUCGGGCcGa-GGUUG-CG- -5'
28915 3' -63.3 NC_006146.1 + 78760 0.66 0.642398
Target:  5'- aGCCCCagGC-CGGGCCCGcCccCCAGCaGCa -3'
miRNA:   3'- -CGGGG--CGcGCUCGGGCcGa-GGUUG-CG- -5'
28915 3' -63.3 NC_006146.1 + 78730 0.66 0.642398
Target:  5'- aGCCCCagGC-CGGGCCCGcCccCCAGCaGCa -3'
miRNA:   3'- -CGGGG--CGcGCUCGGGCcGa-GGUUG-CG- -5'
28915 3' -63.3 NC_006146.1 + 78700 0.66 0.642398
Target:  5'- aGCCCCagGC-CGGGCCCGcCccCCAGCaGCa -3'
miRNA:   3'- -CGGGG--CGcGCUCGGGCcGa-GGUUG-CG- -5'
28915 3' -63.3 NC_006146.1 + 57878 0.66 0.642398
Target:  5'- cGUCCUGC-CGGGCgUCuGCUCCAuCGCc -3'
miRNA:   3'- -CGGGGCGcGCUCG-GGcCGAGGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 51938 0.66 0.641437
Target:  5'- gGCCCCgGUGCGGucugcgcGCCaacuGGCgCCGACGg -3'
miRNA:   3'- -CGGGG-CGCGCU-------CGGg---CCGaGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 157827 0.66 0.632793
Target:  5'- cCUCCGCGCuGGCCCcggaggggacgGGCaCCgAGCGCc -3'
miRNA:   3'- cGGGGCGCGcUCGGG-----------CCGaGG-UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 146674 0.66 0.632793
Target:  5'- cUCCCGgGCGgugggcGGcCCCGGCcCCAACa- -3'
miRNA:   3'- cGGGGCgCGC------UC-GGGCCGaGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 45563 0.66 0.632793
Target:  5'- gGCCuCCGCGagGAGCUCGcGCagCCAG-GCg -3'
miRNA:   3'- -CGG-GGCGCg-CUCGGGC-CGa-GGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 44718 0.66 0.632793
Target:  5'- gGCCCC-CGCuGG-CCGGC-CUGAUGCg -3'
miRNA:   3'- -CGGGGcGCGcUCgGGCCGaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 128206 0.66 0.632793
Target:  5'- cGCCgCgGCGcCGGGCCagacGCUCUuucGGCGCg -3'
miRNA:   3'- -CGG-GgCGC-GCUCGGgc--CGAGG---UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 92314 0.66 0.632793
Target:  5'- gGCUgCUGCugggggGCGGGCCCGGC-CUGGgGCa -3'
miRNA:   3'- -CGG-GGCG------CGCUCGGGCCGaGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 2378 0.66 0.632793
Target:  5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3'
miRNA:   3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5'
28915 3' -63.3 NC_006146.1 + 1446 0.66 0.632793
Target:  5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3'
miRNA:   3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.