miRNA display CGI


Results 61 - 80 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 1446 0.66 0.632793
Target:  5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3'
miRNA:   3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5'
28915 3' -63.3 NC_006146.1 + 44718 0.66 0.632793
Target:  5'- gGCCCC-CGCuGG-CCGGC-CUGAUGCg -3'
miRNA:   3'- -CGGGGcGCGcUCgGGCCGaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 2378 0.66 0.632793
Target:  5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3'
miRNA:   3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5'
28915 3' -63.3 NC_006146.1 + 128206 0.66 0.632793
Target:  5'- cGCCgCgGCGcCGGGCCagacGCUCUuucGGCGCg -3'
miRNA:   3'- -CGG-GgCGC-GCUCGGgc--CGAGG---UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 137770 0.66 0.631832
Target:  5'- -aCCCGgaGCGgggcagcGGCCCGGCgaacccgCCGGCGg -3'
miRNA:   3'- cgGGGCg-CGC-------UCGGGCCGa------GGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 137647 0.66 0.631832
Target:  5'- -aCCCGgaGCGgggcagcGGCCCGGCggacccgCCGGCGg -3'
miRNA:   3'- cgGGGCg-CGC-------UCGGGCCGa------GGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 65195 0.66 0.629911
Target:  5'- aGCCCUagGCGCucugggggcccuggGAGCCCGGgCgUCCAGaggugaccuCGCu -3'
miRNA:   3'- -CGGGG--CGCG--------------CUCGGGCC-G-AGGUU---------GCG- -5'
28915 3' -63.3 NC_006146.1 + 1726 0.66 0.623187
Target:  5'- cGCCCCGCcggcccccccuGCaGGCgCCGGCcCCuccCGCc -3'
miRNA:   3'- -CGGGGCG-----------CGcUCG-GGCCGaGGuu-GCG- -5'
28915 3' -63.3 NC_006146.1 + 18097 0.66 0.623187
Target:  5'- aCUCgCGCGaCGAGCagCGGgcCUCCAACGUc -3'
miRNA:   3'- cGGG-GCGC-GCUCGg-GCC--GAGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 125855 0.66 0.623187
Target:  5'- cGCCCCuaGgGAG-CCGGCcCCGGCc- -3'
miRNA:   3'- -CGGGGcgCgCUCgGGCCGaGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 926 0.66 0.623187
Target:  5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3'
miRNA:   3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 1858 0.66 0.623187
Target:  5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3'
miRNA:   3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 2658 0.66 0.623187
Target:  5'- cGCCCCGCcggcccccccuGCaGGCgCCGGCcCCuccCGCc -3'
miRNA:   3'- -CGGGGCG-----------CGcUCG-GGCCGaGGuu-GCG- -5'
28915 3' -63.3 NC_006146.1 + 3722 0.66 0.623187
Target:  5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3'
miRNA:   3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 2790 0.66 0.623187
Target:  5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3'
miRNA:   3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 3590 0.66 0.623187
Target:  5'- cGCCCCGCcggcccccccuGCaGGCgCCGGCcCCuccCGCc -3'
miRNA:   3'- -CGGGGCG-----------CGcUCG-GGCCGaGGuu-GCG- -5'
28915 3' -63.3 NC_006146.1 + 85351 0.66 0.623187
Target:  5'- uGCCCCcgaccGUGUGAccagauGCCCGGUggaGACGCc -3'
miRNA:   3'- -CGGGG-----CGCGCU------CGGGCCGaggUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 109479 0.66 0.623187
Target:  5'- aGCCCgGC-CGuGCCCGcGUuggCCAcCGCa -3'
miRNA:   3'- -CGGGgCGcGCuCGGGC-CGa--GGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 213 0.66 0.622227
Target:  5'- uGCCCC-CGCGAcgguccccggggcGCCCcuGGCcUCCcccGCGCc -3'
miRNA:   3'- -CGGGGcGCGCU-------------CGGG--CCG-AGGu--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 100190 0.66 0.622227
Target:  5'- aGCCCCcCGCuccuccuGAGCuCCcGUUCcCAGCGCa -3'
miRNA:   3'- -CGGGGcGCG-------CUCG-GGcCGAG-GUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.