miRNA display CGI


Results 81 - 100 of 315 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 165921 0.66 0.613588
Target:  5'- aCCCCGCGUuaguGAaggccGCCaggaGGCUCuCGugGCc -3'
miRNA:   3'- cGGGGCGCG----CU-----CGGg---CCGAG-GUugCG- -5'
28915 3' -63.3 NC_006146.1 + 125964 0.66 0.613588
Target:  5'- uCCCCGCGCcccuGGCCacgagaGGUUcaagagauugucCCAGCGCc -3'
miRNA:   3'- cGGGGCGCGc---UCGGg-----CCGA------------GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 126412 0.66 0.613588
Target:  5'- cGCCCgGgguCGCGAGCaCGGCacaggCCA-CGCu -3'
miRNA:   3'- -CGGGgC---GCGCUCGgGCCGa----GGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 166721 0.66 0.613588
Target:  5'- uUCCCGC-CGAGCCCGuCUCgGG-GCa -3'
miRNA:   3'- cGGGGCGcGCUCGGGCcGAGgUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 105711 0.66 0.613588
Target:  5'- gGCCCCcagaGCGCcuagggcuccaaGAGCCCcaagaGCUCCAAgaGCu -3'
miRNA:   3'- -CGGGG----CGCG------------CUCGGGc----CGAGGUUg-CG- -5'
28915 3' -63.3 NC_006146.1 + 130839 0.66 0.613588
Target:  5'- aCCCCGcCGCccacauguGCCaUGGCUCaCAGCGUc -3'
miRNA:   3'- cGGGGC-GCGcu------CGG-GCCGAG-GUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 7686 0.66 0.613588
Target:  5'- aCCCUGCcuaCGGccuGCCCGGCUCCucugaGGgGCa -3'
miRNA:   3'- cGGGGCGc--GCU---CGGGCCGAGG-----UUgCG- -5'
28915 3' -63.3 NC_006146.1 + 43321 0.66 0.613588
Target:  5'- cGgCCgGCGCG-GCCuCGGCcgcCCAGgGCc -3'
miRNA:   3'- -CgGGgCGCGCuCGG-GCCGa--GGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 151908 0.66 0.613588
Target:  5'- gGCCCCcacUG-GGGUCUGGCUCCGGCc- -3'
miRNA:   3'- -CGGGGc--GCgCUCGGGCCGAGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 108516 0.66 0.613588
Target:  5'- cUUCCuCGCGAGCUgaaCGGCcaggggccucUCCGGCGCg -3'
miRNA:   3'- cGGGGcGCGCUCGG---GCCG----------AGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 67343 0.66 0.612628
Target:  5'- -nCCCGgGCGAGCCCauccucgggguccGGgUCCcACGa -3'
miRNA:   3'- cgGGGCgCGCUCGGG-------------CCgAGGuUGCg -5'
28915 3' -63.3 NC_006146.1 + 146832 0.66 0.603042
Target:  5'- --gCCGCGCcagcguagagcccGGGCCUGGCUCgGGgcCGCg -3'
miRNA:   3'- cggGGCGCG-------------CUCGGGCCGAGgUU--GCG- -5'
28915 3' -63.3 NC_006146.1 + 46421 0.66 0.603042
Target:  5'- aGUCCCGCGUagaacgaggGGGCCCccaggaaGGCggCGGCGUa -3'
miRNA:   3'- -CGGGGCGCG---------CUCGGG-------CCGagGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 157967 0.67 0.594431
Target:  5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3'
miRNA:   3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5'
28915 3' -63.3 NC_006146.1 + 154889 0.67 0.594431
Target:  5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3'
miRNA:   3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5'
28915 3' -63.3 NC_006146.1 + 151811 0.67 0.594431
Target:  5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3'
miRNA:   3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5'
28915 3' -63.3 NC_006146.1 + 169981 0.67 0.594431
Target:  5'- aGgCCgGCGCGcGCCCGgGgUCCcggggggcGGCGCg -3'
miRNA:   3'- -CgGGgCGCGCuCGGGC-CgAGG--------UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 168117 0.67 0.594431
Target:  5'- aGgCCgGCGCGcGCCCGgGgUCCcggggggcGGCGCg -3'
miRNA:   3'- -CgGGgCGCGCuCGGGC-CgAGG--------UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 169049 0.67 0.594431
Target:  5'- aGgCCgGCGCGcGCCCGgGgUCCcggggggcGGCGCg -3'
miRNA:   3'- -CgGGgCGCGCuCGGGC-CgAGG--------UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 148733 0.67 0.594431
Target:  5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3'
miRNA:   3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.