miRNA display CGI


Results 1 - 20 of 315 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 213 0.66 0.622227
Target:  5'- uGCCCC-CGCGAcgguccccggggcGCCCcuGGCcUCCcccGCGCc -3'
miRNA:   3'- -CGGGGcGCGCU-------------CGGG--CCG-AGGu--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 295 0.71 0.337871
Target:  5'- -aCCCGgggGCGGGCCCGGCgcgcucgCCA-CGCc -3'
miRNA:   3'- cgGGGCg--CGCUCGGGCCGa------GGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 515 0.66 0.632793
Target:  5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3'
miRNA:   3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5'
28915 3' -63.3 NC_006146.1 + 587 0.68 0.500956
Target:  5'- gGCCggggGCGCG-GCCCGGCgCCAGCc- -3'
miRNA:   3'- -CGGgg--CGCGCuCGGGCCGaGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 723 0.71 0.377948
Target:  5'- gGCCCCGCccucGgGAGCCCccucagcccccggccGGCgCCGccGCGCg -3'
miRNA:   3'- -CGGGGCG----CgCUCGGG---------------CCGaGGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 795 0.68 0.537722
Target:  5'- cGCCCCGCcggcccccccuGCG-GCgCCGGCcCCuccCGCc -3'
miRNA:   3'- -CGGGGCG-----------CGCuCG-GGCCGaGGuu-GCG- -5'
28915 3' -63.3 NC_006146.1 + 926 0.66 0.623187
Target:  5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3'
miRNA:   3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 1144 0.72 0.330096
Target:  5'- uGCCCC-CGCGAggguccccgggccGCCCcggGGCUCCcccGCGCc -3'
miRNA:   3'- -CGGGGcGCGCU-------------CGGG---CCGAGGu--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 1446 0.66 0.632793
Target:  5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3'
miRNA:   3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5'
28915 3' -63.3 NC_006146.1 + 1518 0.68 0.500956
Target:  5'- gGCCggggGCGCG-GCCCGGCgCCAGCc- -3'
miRNA:   3'- -CGGgg--CGCGCuCGGGCCGaGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 1654 0.71 0.377948
Target:  5'- gGCCCCGCccucGgGAGCCCccucagcccccggccGGCgCCGccGCGCg -3'
miRNA:   3'- -CGGGGCG----CgCUCGGG---------------CCGaGGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 1726 0.66 0.623187
Target:  5'- cGCCCCGCcggcccccccuGCaGGCgCCGGCcCCuccCGCc -3'
miRNA:   3'- -CGGGGCG-----------CGcUCG-GGCCGaGGuu-GCG- -5'
28915 3' -63.3 NC_006146.1 + 1858 0.66 0.623187
Target:  5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3'
miRNA:   3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 2076 0.72 0.330096
Target:  5'- uGCCCC-CGCGAggguccccgggccGCCCcggGGCUCCcccGCGCc -3'
miRNA:   3'- -CGGGGcGCGCU-------------CGGG---CCGAGGu--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 2378 0.66 0.632793
Target:  5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3'
miRNA:   3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5'
28915 3' -63.3 NC_006146.1 + 2450 0.68 0.500956
Target:  5'- gGCCggggGCGCG-GCCCGGCgCCAGCc- -3'
miRNA:   3'- -CGGgg--CGCGCuCGGGCCGaGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 2586 0.71 0.377948
Target:  5'- gGCCCCGCccucGgGAGCCCccucagcccccggccGGCgCCGccGCGCg -3'
miRNA:   3'- -CGGGGCG----CgCUCGGG---------------CCGaGGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 2658 0.66 0.623187
Target:  5'- cGCCCCGCcggcccccccuGCaGGCgCCGGCcCCuccCGCc -3'
miRNA:   3'- -CGGGGCG-----------CGcUCG-GGCCGaGGuu-GCG- -5'
28915 3' -63.3 NC_006146.1 + 2790 0.66 0.623187
Target:  5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3'
miRNA:   3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 3008 0.72 0.330096
Target:  5'- uGCCCC-CGCGAggguccccgggccGCCCcggGGCUCCcccGCGCc -3'
miRNA:   3'- -CGGGGcGCGCU-------------CGGG---CCGAGGu--UGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.