miRNA display CGI


Results 41 - 60 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 16624 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 16936 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 18024 0.67 0.584887
Target:  5'- uGCCCUGCGCccgGGGCCac-CUCCAcCGUc -3'
miRNA:   3'- -CGGGGCGCG---CUCGGgccGAGGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 18097 0.66 0.623187
Target:  5'- aCUCgCGCGaCGAGCagCGGgcCUCCAACGUc -3'
miRNA:   3'- cGGG-GCGC-GCUCGg-GCC--GAGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 19702 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 20013 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 21102 0.67 0.584887
Target:  5'- uGCCCUGCGCccgGGGCCac-CUCCAcCGUc -3'
miRNA:   3'- -CGGGGCGCG---CUCGGgccGAGGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 22780 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 23091 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 24058 0.73 0.260206
Target:  5'- gGCCCCGaGCcaGGCCCgGGCUCUAcgcugGCGCg -3'
miRNA:   3'- -CGGGGCgCGc-UCGGG-CCGAGGU-----UGCG- -5'
28915 3' -63.3 NC_006146.1 + 24180 0.67 0.584887
Target:  5'- uGCCCUGCGCccgGGGCCac-CUCCAcCGUc -3'
miRNA:   3'- -CGGGGCGCG---CUCGGgccGAGGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 25858 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 26169 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 27258 0.67 0.584887
Target:  5'- uGCCCUGCGCccgGGGCCac-CUCCAcCGUc -3'
miRNA:   3'- -CGGGGCGCG---CUCGGgccGAGGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 27770 0.68 0.510049
Target:  5'- uGCCCCGUcgagaaggGUGGGUcucaggucaCCGGCUCCAggaaacuaacaAUGCu -3'
miRNA:   3'- -CGGGGCG--------CGCUCG---------GGCCGAGGU-----------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 28936 0.71 0.352347
Target:  5'- aGCCCCGCcccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG---CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 29247 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 31830 0.67 0.59061
Target:  5'- cCCCCGCGCcaccaGGGCCCguaugguGGCcgccaguuacccguUCCAAgGCc -3'
miRNA:   3'- cGGGGCGCG-----CUCGGG-------CCG--------------AGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 32934 0.69 0.454048
Target:  5'- gGCCCC-CGgGAgGCCCGGCcgcgaUCCucccccgugaacggGGCGCg -3'
miRNA:   3'- -CGGGGcGCgCU-CGGGCCG-----AGG--------------UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 33035 0.67 0.565894
Target:  5'- gGCCCgGgGCgGGGCCCGGgaC--ACGCc -3'
miRNA:   3'- -CGGGgCgCG-CUCGGGCCgaGguUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.