Results 61 - 80 of 315 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 33142 | 0.72 | 0.323833 |
Target: 5'- uGCCCCGCuccgggugggggGUG-GCCCGGCUgggcaCCGcCGCg -3' miRNA: 3'- -CGGGGCG------------CGCuCGGGCCGA-----GGUuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33266 | 0.72 | 0.330797 |
Target: 5'- uGCCCCGCuccgggugggggGUG-GCCCGGCUgggcaCCGcuGCGCc -3' miRNA: 3'- -CGGGGCG------------CGCuCGGGCCGA-----GGU--UGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33350 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33443 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33536 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33629 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33722 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33815 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33908 | 0.66 | 0.651996 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcaCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa-GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34000 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34093 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34186 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34279 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34372 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34465 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34558 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34651 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34744 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 34837 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 35022 | 0.66 | 0.66158 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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