miRNA display CGI


Results 81 - 100 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 35115 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35208 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35301 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35394 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35487 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35580 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35673 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 35766 0.66 0.66158
Target:  5'- aCCCgGCaGCG-GCCCGGCcacCCccCGCc -3'
miRNA:   3'- cGGGgCG-CGCuCGGGCCGa--GGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 38137 0.67 0.565894
Target:  5'- aGCgaCCGUGCGGGaCCgCGGCaUCCGGCc- -3'
miRNA:   3'- -CGg-GGCGCGCUC-GG-GCCG-AGGUUGcg -5'
28915 3' -63.3 NC_006146.1 + 40444 0.68 0.528436
Target:  5'- gGCCCCGUagGCGGGUgCGGCa--AugGCc -3'
miRNA:   3'- -CGGGGCG--CGCUCGgGCCGaggUugCG- -5'
28915 3' -63.3 NC_006146.1 + 41338 0.66 0.632793
Target:  5'- cGCCCCaaccuaucugGCccaGGGCCUGGCggugguggCCGugGCu -3'
miRNA:   3'- -CGGGG----------CGcg-CUCGGGCCGa-------GGUugCG- -5'
28915 3' -63.3 NC_006146.1 + 41494 0.68 0.527511
Target:  5'- gGCCUuggggUGCGCGGggacgacGCCCGGCU--GACGCc -3'
miRNA:   3'- -CGGG-----GCGCGCU-------CGGGCCGAggUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 41573 0.67 0.555514
Target:  5'- cGCUCCGCGCgcugcgcgaggacGAGCUCaGGUUCC--UGCa -3'
miRNA:   3'- -CGGGGCGCG-------------CUCGGG-CCGAGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 41660 0.68 0.491037
Target:  5'- cCCUCGCGCcucaccuGGGCCCgucccugcuGGCUCuuuCAGCGCu -3'
miRNA:   3'- cGGGGCGCG-------CUCGGG---------CCGAG---GUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 41778 0.67 0.575372
Target:  5'- gGCCCUGCGCccGGGCgCCcGCUCUcAgGCc -3'
miRNA:   3'- -CGGGGCGCG--CUCG-GGcCGAGGuUgCG- -5'
28915 3' -63.3 NC_006146.1 + 41854 0.67 0.547063
Target:  5'- uGCgCCgGCGUcuGGGCCCaGCUCgGGCuGCg -3'
miRNA:   3'- -CG-GGgCGCG--CUCGGGcCGAGgUUG-CG- -5'
28915 3' -63.3 NC_006146.1 + 42018 0.66 0.642398
Target:  5'- -gCCCGCGUucGGGCCCGcCUCCgcccccucuucGugGCc -3'
miRNA:   3'- cgGGGCGCG--CUCGGGCcGAGG-----------UugCG- -5'
28915 3' -63.3 NC_006146.1 + 42683 0.75 0.207149
Target:  5'- uCCCCGCGcCGAaagagcgucugGCCCGGCgCCGcgGCGCc -3'
miRNA:   3'- cGGGGCGC-GCU-----------CGGGCCGaGGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 42960 0.69 0.486558
Target:  5'- cGCCCCgggcacgcugaGCGCGgaguuugugggcagcAGCCCGGCgCC--CGCa -3'
miRNA:   3'- -CGGGG-----------CGCGC---------------UCGGGCCGaGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 43321 0.66 0.613588
Target:  5'- cGgCCgGCGCG-GCCuCGGCcgcCCAGgGCc -3'
miRNA:   3'- -CgGGgCGCGCuCGG-GCCGa--GGUUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.