miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 167391 0.72 0.309565
Target:  5'- gGCuCCCGaggGCGgggccggGGCCUGGCgggggCCAGCGCg -3'
miRNA:   3'- -CG-GGGCg--CGC-------UCGGGCCGa----GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 167336 0.68 0.537722
Target:  5'- cGUCCCGuCGUcacGCUCGGCUgCAcGCGCg -3'
miRNA:   3'- -CGGGGC-GCGcu-CGGGCCGAgGU-UGCG- -5'
28915 3' -63.3 NC_006146.1 + 167277 0.71 0.374872
Target:  5'- gGCCgCGCGUGGGgauggCCGGCgggaggggCCGGCGCc -3'
miRNA:   3'- -CGGgGCGCGCUCg----GGCCGa-------GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 167185 0.67 0.594431
Target:  5'- aGgCCgGCGCGcGCCCGgGgUCCcggggggcGGCGCg -3'
miRNA:   3'- -CgGGgCGCGCuCGGGC-CgAGG--------UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 166721 0.66 0.613588
Target:  5'- uUCCCGC-CGAGCCCGuCUCgGG-GCa -3'
miRNA:   3'- cGGGGCGcGCUCGGGCcGAGgUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 165989 0.7 0.398352
Target:  5'- -aCCCGacaGCGAggGUCCGGCUCUgucaccaggcGGCGCa -3'
miRNA:   3'- cgGGGCg--CGCU--CGGGCCGAGG----------UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 165921 0.66 0.613588
Target:  5'- aCCCCGCGUuaguGAaggccGCCaggaGGCUCuCGugGCc -3'
miRNA:   3'- cGGGGCGCG----CU-----CGGg---CCGAG-GUugCG- -5'
28915 3' -63.3 NC_006146.1 + 161978 0.8 0.088865
Target:  5'- cGCCCCGUGgGAGaCCGGCUCCA-CGg -3'
miRNA:   3'- -CGGGGCGCgCUCgGGCCGAGGUuGCg -5'
28915 3' -63.3 NC_006146.1 + 161911 0.8 0.088865
Target:  5'- cGCCCCGUGgGAGaCCGGCUCCA-CGg -3'
miRNA:   3'- -CGGGGCGCgCUCgGGCCGAGGUuGCg -5'
28915 3' -63.3 NC_006146.1 + 161844 0.8 0.088865
Target:  5'- cGCCCCGUGgGAGaCCGGCUCCA-CGg -3'
miRNA:   3'- -CGGGGCGCgCUCgGGCCGAGGUuGCg -5'
28915 3' -63.3 NC_006146.1 + 161777 0.8 0.088865
Target:  5'- cGCCCCGUGgGAGaCCGGCUCCA-CGg -3'
miRNA:   3'- -CGGGGCGCgCUCgGGCCGAGGUuGCg -5'
28915 3' -63.3 NC_006146.1 + 160019 0.68 0.509137
Target:  5'- gGCCuuGaCGUugaugcuGaAGCCCGGCUCCAcggugAUGCc -3'
miRNA:   3'- -CGGggC-GCG-------C-UCGGGCCGAGGU-----UGCG- -5'
28915 3' -63.3 NC_006146.1 + 159270 0.69 0.431085
Target:  5'- cGCCgCCaCGCGGGCCuCGGggCCcuCGCa -3'
miRNA:   3'- -CGG-GGcGCGCUCGG-GCCgaGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 158059 0.67 0.556455
Target:  5'- cGCCCCagGCGCcuccucGGGUCCGGCcgCCGGaggGCu -3'
miRNA:   3'- -CGGGG--CGCG------CUCGGGCCGa-GGUUg--CG- -5'
28915 3' -63.3 NC_006146.1 + 157967 0.67 0.594431
Target:  5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3'
miRNA:   3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5'
28915 3' -63.3 NC_006146.1 + 157827 0.66 0.632793
Target:  5'- cCUCCGCGCuGGCCCcggaggggacgGGCaCCgAGCGCc -3'
miRNA:   3'- cGGGGCGCGcUCGGG-----------CCGaGG-UUGCG- -5'
28915 3' -63.3 NC_006146.1 + 157565 0.72 0.330797
Target:  5'- gGCCuCCGCGUaGGCCgCGGCcgacUCCAcCGCc -3'
miRNA:   3'- -CGG-GGCGCGcUCGG-GCCG----AGGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 157333 0.78 0.119542
Target:  5'- aGCCCCcggccugcuuGCGC-AGCCCGGCgcCCGGCGCc -3'
miRNA:   3'- -CGGGG----------CGCGcUCGGGCCGa-GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 156738 0.7 0.390421
Target:  5'- aGCCUgGCGCaGAcGCUCaGCUCCAcggccaGCGCg -3'
miRNA:   3'- -CGGGgCGCG-CU-CGGGcCGAGGU------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 156579 0.73 0.262543
Target:  5'- gGCCCUGCGUGAGUucuccagcaggugcgCCaGCUCCAgggacaggGCGCu -3'
miRNA:   3'- -CGGGGCGCGCUCG---------------GGcCGAGGU--------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.