Results 41 - 60 of 315 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 156347 | 0.75 | 0.212003 |
Target: 5'- cGCCCCGaaaGCG-GCCCagcaGCUCCAGgGCc -3' miRNA: 3'- -CGGGGCg--CGCuCGGGc---CGAGGUUgCG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 155853 | 0.68 | 0.491935 |
Target: 5'- uGCCuCCuCGCaGGCCCGGCgggcccuggCCAgGCGCc -3' miRNA: 3'- -CGG-GGcGCGcUCGGGCCGa--------GGU-UGCG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 154984 | 0.73 | 0.260206 |
Target: 5'- gGCCUCGCGCaGGGCCCGGCa-CAGaaguUGCu -3' miRNA: 3'- -CGGGGCGCG-CUCGGGCCGagGUU----GCG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 154889 | 0.67 | 0.594431 |
Target: 5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3' miRNA: 3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 151908 | 0.66 | 0.613588 |
Target: 5'- gGCCCCcacUG-GGGUCUGGCUCCGGCc- -3' miRNA: 3'- -CGGGGc--GCgCUCGGGCCGAGGUUGcg -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 151811 | 0.67 | 0.594431 |
Target: 5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3' miRNA: 3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 148733 | 0.67 | 0.594431 |
Target: 5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3' miRNA: 3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 146832 | 0.66 | 0.603042 |
Target: 5'- --gCCGCGCcagcguagagcccGGGCCUGGCUCgGGgcCGCg -3' miRNA: 3'- cggGGCGCG-------------CUCGGGCCGAGgUU--GCG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 146674 | 0.66 | 0.632793 |
Target: 5'- cUCCCGgGCGgugggcGGcCCCGGCcCCAACa- -3' miRNA: 3'- cGGGGCgCGC------UC-GGGCCGaGGUUGcg -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 146625 | 0.66 | 0.642398 |
Target: 5'- aGCCCC-CGgccagggucaCGAgGCCUGGgUCCAugGUc -3' miRNA: 3'- -CGGGGcGC----------GCU-CGGGCCgAGGUugCG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 145656 | 0.67 | 0.594431 |
Target: 5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3' miRNA: 3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 144757 | 0.66 | 0.651996 |
Target: 5'- cCCCCGUGCucuuuccgaccGGGcCCCGGUgccuuUCCAugGa -3' miRNA: 3'- cGGGGCGCG-----------CUC-GGGCCG-----AGGUugCg -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 142643 | 0.67 | 0.584887 |
Target: 5'- uGCCCCGaagcccaugGCGuGCUCGGCUau--CGCa -3' miRNA: 3'- -CGGGGCg--------CGCuCGGGCCGAgguuGCG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 142578 | 0.67 | 0.594431 |
Target: 5'- gGCCaCCGgGCGGGgCCagGGCcUCCAGagGCa -3' miRNA: 3'- -CGG-GGCgCGCUCgGG--CCG-AGGUUg-CG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 142111 | 0.72 | 0.297074 |
Target: 5'- uGCCCCaaGUGAGCCCucGGCcCCAGgGUa -3' miRNA: 3'- -CGGGGcgCGCUCGGG--CCGaGGUUgCG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 138993 | 0.71 | 0.359747 |
Target: 5'- uGCCCUuuuGCGCucuagaggGAGCCCGGCUuuuucccuuUCGGCGUu -3' miRNA: 3'- -CGGGG---CGCG--------CUCGGGCCGA---------GGUUGCG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 137978 | 0.66 | 0.652955 |
Target: 5'- gGCCUCcCGgGGGCCCGGCggggugggggguGCGCc -3' miRNA: 3'- -CGGGGcGCgCUCGGGCCGaggu--------UGCG- -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 137770 | 0.66 | 0.631832 |
Target: 5'- -aCCCGgaGCGgggcagcGGCCCGGCgaacccgCCGGCGg -3' miRNA: 3'- cgGGGCg-CGC-------UCGGGCCGa------GGUUGCg -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 137647 | 0.66 | 0.631832 |
Target: 5'- -aCCCGgaGCGgggcagcGGCCCGGCggacccgCCGGCGg -3' miRNA: 3'- cgGGGCg-CGC-------UCGGGCCGa------GGUUGCg -5' |
|||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 137523 | 0.67 | 0.556455 |
Target: 5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3' miRNA: 3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home