miRNA display CGI


Results 61 - 80 of 315 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 137430 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 137337 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 137244 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 137151 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 137058 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136965 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136872 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136779 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136687 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136594 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136501 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136408 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136315 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136222 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136129 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136036 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 135943 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 135850 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 135757 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 135665 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.