miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 156579 0.73 0.262543
Target:  5'- gGCCCUGCGUGAGUucuccagcaggugcgCCaGCUCCAgggacaggGCGCu -3'
miRNA:   3'- -CGGGGCGCGCUCG---------------GGcCGAGGU--------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 156347 0.75 0.212003
Target:  5'- cGCCCCGaaaGCG-GCCCagcaGCUCCAGgGCc -3'
miRNA:   3'- -CGGGGCg--CGCuCGGGc---CGAGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 20013 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 161978 0.8 0.088865
Target:  5'- cGCCCCGUGgGAGaCCGGCUCCA-CGg -3'
miRNA:   3'- -CGGGGCGCgCUCgGGCCGAGGUuGCg -5'
28915 3' -63.3 NC_006146.1 + 45990 0.71 0.337871
Target:  5'- cGCCCCGCGUGuaGGCCCGcCUgaCAaagucGCGCa -3'
miRNA:   3'- -CGGGGCGCGC--UCGGGCcGAg-GU-----UGCG- -5'
28915 3' -63.3 NC_006146.1 + 168323 0.72 0.309565
Target:  5'- gGCuCCCGaggGCGgggccggGGCCUGGCgggggCCAGCGCg -3'
miRNA:   3'- -CG-GGGCg--CGC-------UCGGGCCGa----GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 169499 0.75 0.207149
Target:  5'- gGUCCCGCG-GGGCCCGGCgcgugCCGggggacccggggGCGUg -3'
miRNA:   3'- -CGGGGCGCgCUCGGGCCGa----GGU------------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 161911 0.8 0.088865
Target:  5'- cGCCCCGUGgGAGaCCGGCUCCA-CGg -3'
miRNA:   3'- -CGGGGCGCgCUCgGGCCGAGGUuGCg -5'
28915 3' -63.3 NC_006146.1 + 167391 0.72 0.309565
Target:  5'- gGCuCCCGaggGCGgggccggGGCCUGGCgggggCCAGCGCg -3'
miRNA:   3'- -CG-GGGCg--CGC-------UCGGGCCGa----GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 161844 0.8 0.088865
Target:  5'- cGCCCCGUGgGAGaCCGGCUCCA-CGg -3'
miRNA:   3'- -CGGGGCGCgCUCgGGCCGAGGUuGCg -5'
28915 3' -63.3 NC_006146.1 + 170430 0.75 0.207149
Target:  5'- gGUCCCGCG-GGGCCCGGCgcgugCCGggggacccggggGCGUg -3'
miRNA:   3'- -CGGGGCGCgCUCGGGCCGa----GGU------------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 142111 0.72 0.297074
Target:  5'- uGCCCCaaGUGAGCCCucGGCcCCAGgGUa -3'
miRNA:   3'- -CGGGGcgCGCUCGGG--CCGaGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 67315 0.76 0.184299
Target:  5'- gGCCacguCCGCGCuGAGCCCGGC-CCAG-GCc -3'
miRNA:   3'- -CGG----GGCGCG-CUCGGGCCGaGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 23091 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 58021 0.78 0.12863
Target:  5'- gGCCuUCGCGCaGAGCCCGGC-CUAcgaGCGCa -3'
miRNA:   3'- -CGG-GGCGCG-CUCGGGCCGaGGU---UGCG- -5'
28915 3' -63.3 NC_006146.1 + 57396 0.79 0.105714
Target:  5'- gGCCCCGCGacCGuGCCCGGC--CGACGCa -3'
miRNA:   3'- -CGGGGCGC--GCuCGGGCCGagGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 168209 0.71 0.374872
Target:  5'- gGCCgCGCGUGGGgauggCCGGCgggaggggCCGGCGCc -3'
miRNA:   3'- -CGGgGCGCGCUCg----GGCCGa-------GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 28936 0.71 0.352347
Target:  5'- aGCCCCGCcccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG---CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 46774 0.72 0.323833
Target:  5'- aCCCCGgGCGGauGgCUGGCcggCCGGCGCg -3'
miRNA:   3'- cGGGGCgCGCU--CgGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 169255 0.72 0.309565
Target:  5'- gGCuCCCGaggGCGgggccggGGCCUGGCgggggCCAGCGCg -3'
miRNA:   3'- -CG-GGGCg--CGC-------UCGGGCCGa----GGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.