miRNA display CGI


Results 61 - 80 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 28936 0.71 0.352347
Target:  5'- aGCCCCGCcccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG---CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 170073 0.71 0.374872
Target:  5'- gGCCgCGCGUGGGgauggCCGGCgggaggggCCGGCGCc -3'
miRNA:   3'- -CGGgGCGCGCUCg----GGCCGa-------GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 130027 0.79 0.114943
Target:  5'- gGCCCCGgcuccgucuccggacCGCGAGCCgGGCcUCCAagaGCGCc -3'
miRNA:   3'- -CGGGGC---------------GCGCUCGGgCCG-AGGU---UGCG- -5'
28915 3' -63.3 NC_006146.1 + 13858 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 26169 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 167635 0.75 0.202391
Target:  5'- gGUCCCGCG-GGGCCCGGCgcgugCCGggggcccggggGCGUg -3'
miRNA:   3'- -CGGGGCGCgCUCGGGCCGa----GGU-----------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 47645 0.75 0.216954
Target:  5'- cGUCUCuggcCGCG-GCCCGGC-CCAGCGCg -3'
miRNA:   3'- -CGGGGc---GCGCuCGGGCCGaGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 142111 0.72 0.297074
Target:  5'- uGCCCCaaGUGAGCCCucGGCcCCAGgGUa -3'
miRNA:   3'- -CGGGGcgCGCUCGGG--CCGaGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 168323 0.72 0.309565
Target:  5'- gGCuCCCGaggGCGgggccggGGCCUGGCgggggCCAGCGCg -3'
miRNA:   3'- -CG-GGGCg--CGC-------UCGGGCCGa----GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 33142 0.72 0.323833
Target:  5'- uGCCCCGCuccgggugggggGUG-GCCCGGCUgggcaCCGcCGCg -3'
miRNA:   3'- -CGGGGCG------------CGCuCGGGCCGA-----GGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 167336 0.68 0.537722
Target:  5'- cGUCCCGuCGUcacGCUCGGCUgCAcGCGCg -3'
miRNA:   3'- -CGGGGC-GCGcu-CGGGCCGAgGU-UGCG- -5'
28915 3' -63.3 NC_006146.1 + 3141 0.68 0.537722
Target:  5'- aGCCauGCGCGcccaCCCGGCcCCuGCGCc -3'
miRNA:   3'- -CGGggCGCGCuc--GGGCCGaGGuUGCG- -5'
28915 3' -63.3 NC_006146.1 + 62996 0.7 0.382594
Target:  5'- gGCCCUGgGCuccggGAGUCUGGCgggugcCCGACGUa -3'
miRNA:   3'- -CGGGGCgCG-----CUCGGGCCGa-----GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 55760 0.7 0.422753
Target:  5'- cGCCCgGCgGCGGGCCaggGGCagcgaggCCAccACGCu -3'
miRNA:   3'- -CGGGgCG-CGCUCGGg--CCGa------GGU--UGCG- -5'
28915 3' -63.3 NC_006146.1 + 13546 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 22780 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 127141 0.69 0.474123
Target:  5'- uGCUCCGCGUgGAGCUggaCGGCgUCAuGCGCg -3'
miRNA:   3'- -CGGGGCGCG-CUCGG---GCCGaGGU-UGCG- -5'
28915 3' -63.3 NC_006146.1 + 155853 0.68 0.491935
Target:  5'- uGCCuCCuCGCaGGCCCGGCgggcccuggCCAgGCGCc -3'
miRNA:   3'- -CGG-GGcGCGcUCGGGCCGa--------GGU-UGCG- -5'
28915 3' -63.3 NC_006146.1 + 62338 0.68 0.510049
Target:  5'- cGCCgCCGCcaGCcaAGCCCaGCcacUCCAACGCc -3'
miRNA:   3'- -CGG-GGCG--CGc-UCGGGcCG---AGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 128052 0.68 0.528436
Target:  5'- aCCUgCGCGUGGGCCUGGCggcccUCGAgGCc -3'
miRNA:   3'- cGGG-GCGCGCUCGGGCCGa----GGUUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.