miRNA display CGI


Results 81 - 100 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 3' -63.3 NC_006146.1 + 129805 0.7 0.406385
Target:  5'- gGCCCUGCac--GCCUGGCUCCccuCGCu -3'
miRNA:   3'- -CGGGGCGcgcuCGGGCCGAGGuu-GCG- -5'
28915 3' -63.3 NC_006146.1 + 53884 0.69 0.439511
Target:  5'- cGCCCCcguaggGCGUagcccagguccaGGGCCC-GCUCCAcGCGCu -3'
miRNA:   3'- -CGGGG------CGCG------------CUCGGGcCGAGGU-UGCG- -5'
28915 3' -63.3 NC_006146.1 + 16624 0.69 0.456641
Target:  5'- aGCCCCGUccccGCccGCCCGGCcagagacucUCCcuCGCg -3'
miRNA:   3'- -CGGGGCG----CGcuCGGGCCG---------AGGuuGCG- -5'
28915 3' -63.3 NC_006146.1 + 61912 0.69 0.474123
Target:  5'- aGCCCCugaGCGUGGGUCC--CUCCGAgGCc -3'
miRNA:   3'- -CGGGG---CGCGCUCGGGccGAGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 170471 0.69 0.48299
Target:  5'- uGUCCCGCgacccgagggGCGAGCggggggcuuccCCGGacccCCAGCGCg -3'
miRNA:   3'- -CGGGGCG----------CGCUCG-----------GGCCga--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 62338 0.68 0.510049
Target:  5'- cGCCgCCGCcaGCcaAGCCCaGCcacUCCAACGCc -3'
miRNA:   3'- -CGG-GGCG--CGc-UCGGGcCG---AGGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 128052 0.68 0.528436
Target:  5'- aCCUgCGCGUGGGCCUGGCggcccUCGAgGCc -3'
miRNA:   3'- cGGG-GCGCGCUCGGGCCGa----GGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 33142 0.72 0.323833
Target:  5'- uGCCCCGCuccgggugggggGUG-GCCCGGCUgggcaCCGcCGCg -3'
miRNA:   3'- -CGGGGCG------------CGCuCGGGCCGA-----GGUuGCG- -5'
28915 3' -63.3 NC_006146.1 + 168323 0.72 0.309565
Target:  5'- gGCuCCCGaggGCGgggccggGGCCUGGCgggggCCAGCGCg -3'
miRNA:   3'- -CG-GGGCg--CGC-------UCGGGCCGa----GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 142111 0.72 0.297074
Target:  5'- uGCCCCaaGUGAGCCCucGGCcCCAGgGUa -3'
miRNA:   3'- -CGGGGcgCGCUCGGG--CCGaGGUUgCG- -5'
28915 3' -63.3 NC_006146.1 + 53108 0.67 0.547063
Target:  5'- aGUCCgGagGCG-GCCCGGC-CCGggggaGCGCg -3'
miRNA:   3'- -CGGGgCg-CGCuCGGGCCGaGGU-----UGCG- -5'
28915 3' -63.3 NC_006146.1 + 99907 0.67 0.547063
Target:  5'- uGCCCCccggGCGCaaGAG-CgGGCUCCGGguCGCa -3'
miRNA:   3'- -CGGGG----CGCG--CUCgGgCCGAGGUU--GCG- -5'
28915 3' -63.3 NC_006146.1 + 135386 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 135757 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 136036 0.67 0.556455
Target:  5'- uGCCCCugggucCGCu-GCCCcGCUCCGGCGg -3'
miRNA:   3'- -CGGGGc-----GCGcuCGGGcCGAGGUUGCg -5'
28915 3' -63.3 NC_006146.1 + 130027 0.79 0.114943
Target:  5'- gGCCCCGgcuccgucuccggacCGCGAGCCgGGCcUCCAagaGCGCc -3'
miRNA:   3'- -CGGGGC---------------GCGCUCGGgCCG-AGGU---UGCG- -5'
28915 3' -63.3 NC_006146.1 + 13858 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 26169 0.77 0.156062
Target:  5'- aCCCCG-GCG-GCCCGGUgugCCAGCGUc -3'
miRNA:   3'- cGGGGCgCGCuCGGGCCGa--GGUUGCG- -5'
28915 3' -63.3 NC_006146.1 + 167635 0.75 0.202391
Target:  5'- gGUCCCGCG-GGGCCCGGCgcgugCCGggggcccggggGCGUg -3'
miRNA:   3'- -CGGGGCGCgCUCGGGCCGa----GGU-----------UGCG- -5'
28915 3' -63.3 NC_006146.1 + 47645 0.75 0.216954
Target:  5'- cGUCUCuggcCGCG-GCCCGGC-CCAGCGCg -3'
miRNA:   3'- -CGGGGc---GCGCuCGGGCCGaGGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.