Results 81 - 100 of 315 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28915 | 3' | -63.3 | NC_006146.1 | + | 2790 | 0.66 | 0.623187 |
Target: 5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3' miRNA: 3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 2658 | 0.66 | 0.623187 |
Target: 5'- cGCCCCGCcggcccccccuGCaGGCgCCGGCcCCuccCGCc -3' miRNA: 3'- -CGGGGCG-----------CGcUCG-GGCCGaGGuu-GCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 1858 | 0.66 | 0.623187 |
Target: 5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3' miRNA: 3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 926 | 0.66 | 0.623187 |
Target: 5'- aCCCCGgGCGcGCgCCGGcCUCC--CGUc -3' miRNA: 3'- cGGGGCgCGCuCG-GGCC-GAGGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 1726 | 0.66 | 0.623187 |
Target: 5'- cGCCCCGCcggcccccccuGCaGGCgCCGGCcCCuccCGCc -3' miRNA: 3'- -CGGGGCG-----------CGcUCG-GGCCGaGGuu-GCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 18097 | 0.66 | 0.623187 |
Target: 5'- aCUCgCGCGaCGAGCagCGGgcCUCCAACGUc -3' miRNA: 3'- cGGG-GCGC-GCUCGg-GCC--GAGGUUGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 125855 | 0.66 | 0.623187 |
Target: 5'- cGCCCCuaGgGAG-CCGGCcCCGGCc- -3' miRNA: 3'- -CGGGGcgCgCUCgGGCCGaGGUUGcg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 109479 | 0.66 | 0.623187 |
Target: 5'- aGCCCgGC-CGuGCCCGcGUuggCCAcCGCa -3' miRNA: 3'- -CGGGgCGcGCuCGGGC-CGa--GGUuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 137647 | 0.66 | 0.631832 |
Target: 5'- -aCCCGgaGCGgggcagcGGCCCGGCggacccgCCGGCGg -3' miRNA: 3'- cgGGGCg-CGC-------UCGGGCCGa------GGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 137770 | 0.66 | 0.631832 |
Target: 5'- -aCCCGgaGCGgggcagcGGCCCGGCgaacccgCCGGCGg -3' miRNA: 3'- cgGGGCg-CGC-------UCGGGCCGa------GGUUGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 129633 | 0.66 | 0.651996 |
Target: 5'- gGUCCUcCGCGGGCgCGuGCUCCgcccgggaAugGCg -3' miRNA: 3'- -CGGGGcGCGCUCGgGC-CGAGG--------UugCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 33908 | 0.66 | 0.651996 |
Target: 5'- aCCCgGCaGCG-GCCCGGCcaCCccCGCc -3' miRNA: 3'- cGGGgCG-CGCuCGGGCCGa-GGuuGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 42018 | 0.66 | 0.642398 |
Target: 5'- -gCCCGCGUucGGGCCCGcCUCCgcccccucuucGugGCc -3' miRNA: 3'- cgGGGCGCG--CUCGGGCcGAGG-----------UugCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 3310 | 0.66 | 0.632793 |
Target: 5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3' miRNA: 3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 2378 | 0.66 | 0.632793 |
Target: 5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3' miRNA: 3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 1446 | 0.66 | 0.632793 |
Target: 5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3' miRNA: 3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 515 | 0.66 | 0.632793 |
Target: 5'- gGCCCCcagGgGAgGCCCGGCcUCCAcacACGg -3' miRNA: 3'- -CGGGGcg-CgCU-CGGGCCG-AGGU---UGCg -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 43822 | 0.66 | 0.632793 |
Target: 5'- cGCUCCGCcCuGGCCCuuucGGCUuCCcGCGCc -3' miRNA: 3'- -CGGGGCGcGcUCGGG----CCGA-GGuUGCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 92314 | 0.66 | 0.632793 |
Target: 5'- gGCUgCUGCugggggGCGGGCCCGGC-CUGGgGCa -3' miRNA: 3'- -CGG-GGCG------CGCUCGGGCCGaGGUUgCG- -5' |
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28915 | 3' | -63.3 | NC_006146.1 | + | 213 | 0.66 | 0.622227 |
Target: 5'- uGCCCC-CGCGAcgguccccggggcGCCCcuGGCcUCCcccGCGCc -3' miRNA: 3'- -CGGGGcGCGCU-------------CGGG--CCG-AGGu--UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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