miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28915 5' -55.1 NC_006146.1 + 43542 0.66 0.93624
Target:  5'- gGCGCGCgcaaGAAGCaGUAGGaGAcGCGGcACg -3'
miRNA:   3'- -UGCGCGa---CUUCG-CGUUC-CU-CGUCaUG- -5'
28915 5' -55.1 NC_006146.1 + 70700 0.66 0.93064
Target:  5'- cUGCGCUGGgaacgggAGCuCAggAGGAGCGGgggGCu -3'
miRNA:   3'- uGCGCGACU-------UCGcGU--UCCUCGUCa--UG- -5'
28915 5' -55.1 NC_006146.1 + 45068 0.66 0.925838
Target:  5'- gGCG-GCUGAGGUGCcucguggggagAGGGAG-GGUGCc -3'
miRNA:   3'- -UGCgCGACUUCGCG-----------UUCCUCgUCAUG- -5'
28915 5' -55.1 NC_006146.1 + 90180 0.66 0.925838
Target:  5'- cCGCgGCagggGAgguAGUGCAGGGGGCAGa-- -3'
miRNA:   3'- uGCG-CGa---CU---UCGCGUUCCUCGUCaug -5'
28915 5' -55.1 NC_006146.1 + 70960 0.66 0.925838
Target:  5'- gAUGCGgaGGAG-GC-GGGAGCgggGGUGCg -3'
miRNA:   3'- -UGCGCgaCUUCgCGuUCCUCG---UCAUG- -5'
28915 5' -55.1 NC_006146.1 + 33030 0.66 0.920267
Target:  5'- aGCGgGCU-AGGCGUAGGGAGUgagGGUc- -3'
miRNA:   3'- -UGCgCGAcUUCGCGUUCCUCG---UCAug -5'
28915 5' -55.1 NC_006146.1 + 110846 0.66 0.920267
Target:  5'- ---aGCUGAAGgaCGCGcAGGAGCGGcUGCu -3'
miRNA:   3'- ugcgCGACUUC--GCGU-UCCUCGUC-AUG- -5'
28915 5' -55.1 NC_006146.1 + 49775 0.66 0.920267
Target:  5'- gACGCcgGCUGAuGUGUcucagGAGGGGCAGg-- -3'
miRNA:   3'- -UGCG--CGACUuCGCG-----UUCCUCGUCaug -5'
28915 5' -55.1 NC_006146.1 + 43572 0.66 0.920267
Target:  5'- gGCGUaCUG-AGCGUucccGGGGAGCGGgGCg -3'
miRNA:   3'- -UGCGcGACuUCGCG----UUCCUCGUCaUG- -5'
28915 5' -55.1 NC_006146.1 + 128817 0.66 0.914451
Target:  5'- cCGCGaagGAcGGCGCGguccAGGAGCAGg-- -3'
miRNA:   3'- uGCGCga-CU-UCGCGU----UCCUCGUCaug -5'
28915 5' -55.1 NC_006146.1 + 70230 0.66 0.914451
Target:  5'- aGCGCGUUGAAGUaGCAGGGGuacccCAGg-- -3'
miRNA:   3'- -UGCGCGACUUCG-CGUUCCUc----GUCaug -5'
28915 5' -55.1 NC_006146.1 + 59444 0.66 0.90839
Target:  5'- -gGCGC---AGgGCAGGGGGCAGgACu -3'
miRNA:   3'- ugCGCGacuUCgCGUUCCUCGUCaUG- -5'
28915 5' -55.1 NC_006146.1 + 77899 0.67 0.888764
Target:  5'- cACGCuGCUuaacAGGCGCAGGG-GCGGgcgGCc -3'
miRNA:   3'- -UGCG-CGAc---UUCGCGUUCCuCGUCa--UG- -5'
28915 5' -55.1 NC_006146.1 + 95298 0.67 0.881751
Target:  5'- -gGCGCUGuAGaCGguGGG-GCAGUAg -3'
miRNA:   3'- ugCGCGACuUC-GCguUCCuCGUCAUg -5'
28915 5' -55.1 NC_006146.1 + 154650 0.67 0.881751
Target:  5'- gGCGCGCUGccgccGGCugcaccguggugGCGGGGGGCGcUGCu -3'
miRNA:   3'- -UGCGCGACu----UCG------------CGUUCCUCGUcAUG- -5'
28915 5' -55.1 NC_006146.1 + 129243 0.67 0.87451
Target:  5'- gACGgGCccaggUGAGGCGCGAGGGuCAGg-- -3'
miRNA:   3'- -UGCgCG-----ACUUCGCGUUCCUcGUCaug -5'
28915 5' -55.1 NC_006146.1 + 165377 0.67 0.87451
Target:  5'- -aGCGU---GGCGCcAGGGGuCAGUGCg -3'
miRNA:   3'- ugCGCGacuUCGCGuUCCUC-GUCAUG- -5'
28915 5' -55.1 NC_006146.1 + 168122 0.68 0.867045
Target:  5'- gGCGCGCgcccGggGuCcCGGGGGGCGGcGCg -3'
miRNA:   3'- -UGCGCGa---CuuC-GcGUUCCUCGUCaUG- -5'
28915 5' -55.1 NC_006146.1 + 167190 0.68 0.867045
Target:  5'- gGCGCGCgcccGggGuCcCGGGGGGCGGcGCg -3'
miRNA:   3'- -UGCGCGa---CuuC-GcGUUCCUCGUCaUG- -5'
28915 5' -55.1 NC_006146.1 + 169054 0.68 0.867045
Target:  5'- gGCGCGCgcccGggGuCcCGGGGGGCGGcGCg -3'
miRNA:   3'- -UGCGCGa---CuuC-GcGUUCCUCGUCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.