Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28916 | 5' | -57.7 | NC_006146.1 | + | 142457 | 0.66 | 0.851835 |
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Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 142673 | 0.67 | 0.792928 |
|
Target: 5'- cGCAGCCACCUGcc--CUCCGGcUGggUc -3' miRNA: 3'- -CGUUGGUGGACcgccGAGGCC-ACuuA- -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 142864 | 0.67 | 0.819187 |
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Target: 5'- uGCAGCCACCUGcc--CUCCGGcUGggUc -3' miRNA: 3'- -CGUUGGUGGACcgccGAGGCC-ACuuA- -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 145535 | 0.66 | 0.851835 |
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Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 148613 | 0.66 | 0.851835 |
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Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 154768 | 0.66 | 0.851835 |
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Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 157846 | 0.66 | 0.851835 |
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Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 160064 | 0.68 | 0.717298 |
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Target: 5'- -uGGCCugCUGGCuGGCUUCGGa---- -3' miRNA: 3'- cgUUGGugGACCG-CCGAGGCCacuua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 160616 | 0.67 | 0.801834 |
|
Target: 5'- uCGGCCGCCUGGCaugccaGCUCCGcGUa--- -3' miRNA: 3'- cGUUGGUGGACCGc-----CGAGGC-CAcuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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