Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 110463 | 0.7 | 0.809615 |
Target: 5'- cACCAGCUUCuc-GGCCaUGGCCAggaaggUGAa -3' miRNA: 3'- -UGGUUGAAGuccUCGG-ACCGGUa-----ACU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 111416 | 0.7 | 0.835782 |
Target: 5'- -aCAGCagUCAGGAcucaGCCgUGGCCAUUGc -3' miRNA: 3'- ugGUUGa-AGUCCU----CGG-ACCGGUAACu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 114339 | 0.68 | 0.896531 |
Target: 5'- cGCCccuGACggagguggaCGGGGGCCUGGCCcgcgUGAc -3' miRNA: 3'- -UGG---UUGaa-------GUCCUCGGACCGGua--ACU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 120405 | 0.69 | 0.882693 |
Target: 5'- cACCGACggggUGGGGGCCaaccUGGCCAUc-- -3' miRNA: 3'- -UGGUUGaa--GUCCUCGG----ACCGGUAacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 124133 | 0.69 | 0.879813 |
Target: 5'- gGCCAGCcauccgcccggggUCGGGAGgcgaggacCCUGGCCAgcgUGGc -3' miRNA: 3'- -UGGUUGa------------AGUCCUC--------GGACCGGUa--ACU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 124574 | 0.66 | 0.950972 |
Target: 5'- uACCGGCUggUCAGaAGCCcGGCCGa--- -3' miRNA: 3'- -UGGUUGA--AGUCcUCGGaCCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 126192 | 0.69 | 0.852271 |
Target: 5'- gGCCGGCcagCGGGGGCCacGGCCAc--- -3' miRNA: 3'- -UGGUUGaa-GUCCUCGGa-CCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 128765 | 0.71 | 0.781935 |
Target: 5'- gGCCuuCUUCuGGAGUgUGGCCAg--- -3' miRNA: 3'- -UGGuuGAAGuCCUCGgACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 131341 | 0.73 | 0.65075 |
Target: 5'- uGCC--CUcCAGGAuCCUGGCCAUUGAc -3' miRNA: 3'- -UGGuuGAaGUCCUcGGACCGGUAACU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 141565 | 0.66 | 0.969085 |
Target: 5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3' miRNA: 3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 142856 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 144643 | 0.66 | 0.969085 |
Target: 5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3' miRNA: 3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 145934 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 147720 | 0.66 | 0.969085 |
Target: 5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3' miRNA: 3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 149012 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 150798 | 0.66 | 0.969085 |
Target: 5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3' miRNA: 3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 152090 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 153876 | 0.66 | 0.969085 |
Target: 5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3' miRNA: 3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 155168 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 156954 | 0.66 | 0.969085 |
Target: 5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3' miRNA: 3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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