Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 12691 | 1.08 | 0.004979 |
Target: 5'- cACCAACUUCAGGAGCCUGGCCAUUGAc -3' miRNA: 3'- -UGGUUGAAGUCCUCGGACCGGUAACU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 141565 | 0.66 | 0.969085 |
Target: 5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3' miRNA: 3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 126192 | 0.69 | 0.852271 |
Target: 5'- gGCCGGCcagCGGGGGCCacGGCCAc--- -3' miRNA: 3'- -UGGUUGaa-GUCCUCGGa-CCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 9929 | 0.69 | 0.870951 |
Target: 5'- aGCCcGCgagCAGGAgcagcugagcgaaaaGCCUGGCCAUg-- -3' miRNA: 3'- -UGGuUGaa-GUCCU---------------CGGACCGGUAacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 124133 | 0.69 | 0.879813 |
Target: 5'- gGCCAGCcauccgcccggggUCGGGAGgcgaggacCCUGGCCAgcgUGGc -3' miRNA: 3'- -UGGUUGa------------AGUCCUC--------GGACCGGUa--ACU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 144643 | 0.66 | 0.969085 |
Target: 5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3' miRNA: 3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 40809 | 0.66 | 0.965917 |
Target: 5'- aGCCGGCgUCAauGGCCuUGGCCAU-GAg -3' miRNA: 3'- -UGGUUGaAGUccUCGG-ACCGGUAaCU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 74493 | 0.67 | 0.946643 |
Target: 5'- cGCUGugUUCAGGAGC-UGGCaCAUc-- -3' miRNA: 3'- -UGGUugAAGUCCUCGgACCG-GUAacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 31815 | 0.67 | 0.946643 |
Target: 5'- cCCAACUcCAGGcgaGGCCcgUGGCCAa--- -3' miRNA: 3'- uGGUUGAaGUCC---UCGG--ACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 23348 | 0.67 | 0.94207 |
Target: 5'- gACCGACcUCAGc-GCCUGGCgCGUgGAa -3' miRNA: 3'- -UGGUUGaAGUCcuCGGACCG-GUAaCU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 160073 | 0.67 | 0.941599 |
Target: 5'- gGCUGGCUUC-GGAGCCuaucucaUGGCCcaUGGg -3' miRNA: 3'- -UGGUUGAAGuCCUCGG-------ACCGGuaACU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 158247 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 155168 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 152090 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 145934 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 142856 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 39800 | 0.68 | 0.909405 |
Target: 5'- cCCGGCUUCuGGGAcGgC-GGCCGUUGAc -3' miRNA: 3'- uGGUUGAAG-UCCU-CgGaCCGGUAACU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 71242 | 0.68 | 0.90309 |
Target: 5'- gUCAACUcCuGGGGCCUGGCgGggGGc -3' miRNA: 3'- uGGUUGAaGuCCUCGGACCGgUaaCU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 114339 | 0.68 | 0.896531 |
Target: 5'- cGCCccuGACggagguggaCGGGGGCCUGGCCcgcgUGAc -3' miRNA: 3'- -UGG---UUGaa-------GUCCUCGGACCGGua--ACU- -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 161319 | 0.69 | 0.889731 |
Target: 5'- uGCCAACagUgAGGGGCa-GGCgCAUUGAa -3' miRNA: 3'- -UGGUUGa-AgUCCUCGgaCCG-GUAACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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