Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 142856 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 145934 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 149012 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 152090 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 155168 | 0.67 | 0.93725 |
Target: 5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3' miRNA: 3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5' |
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28917 | 3' | -53.6 | NC_006146.1 | + | 156954 | 0.66 | 0.969085 |
Target: 5'- gUgAGC-UCAGGAGCCggGGCCucgggGAg -3' miRNA: 3'- uGgUUGaAGUCCUCGGa-CCGGuaa--CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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