Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 12691 | 1.08 | 0.004979 |
Target: 5'- cACCAACUUCAGGAGCCUGGCCAUUGAc -3' miRNA: 3'- -UGGUUGAAGUCCUCGGACCGGUAACU- -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 167502 | 0.75 | 0.567321 |
Target: 5'- uGCCAcuucacaggcacGCUUCAGG-GCCUguaggacgccgcGGCCGUUGAu -3' miRNA: 3'- -UGGU------------UGAAGUCCuCGGA------------CCGGUAACU- -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 101400 | 0.74 | 0.598453 |
Target: 5'- gGCCGACgaucuuuggCAGGucgGGCCUGGCCAUg-- -3' miRNA: 3'- -UGGUUGaa-------GUCC---UCGGACCGGUAacu -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 64749 | 0.73 | 0.65075 |
Target: 5'- gACUauGACUUCucGAGCCUGGCC-UUGGa -3' miRNA: 3'- -UGG--UUGAAGucCUCGGACCGGuAACU- -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 131341 | 0.73 | 0.65075 |
Target: 5'- uGCC--CUcCAGGAuCCUGGCCAUUGAc -3' miRNA: 3'- -UGGuuGAaGUCCUcGGACCGGUAACU- -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 59254 | 0.73 | 0.692356 |
Target: 5'- gGCCuggGugUUCAGG-GCCUGGCCGa--- -3' miRNA: 3'- -UGG---UugAAGUCCuCGGACCGGUaacu -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 165807 | 0.72 | 0.723041 |
Target: 5'- gGCCGGCUagGGGGGCguccCUGGCCGcgUGGa -3' miRNA: 3'- -UGGUUGAagUCCUCG----GACCGGUa-ACU- -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 39406 | 0.72 | 0.750035 |
Target: 5'- gGCCAcauggACUUgAagcagaaguuggccGGGGCCUGGCCcgUGAg -3' miRNA: 3'- -UGGU-----UGAAgU--------------CCUCGGACCGGuaACU- -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 97356 | 0.71 | 0.772414 |
Target: 5'- aACCAcccgcccggggaGC-UCcGGAGCCUGGCCAUg-- -3' miRNA: 3'- -UGGU------------UGaAGuCCUCGGACCGGUAacu -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 128765 | 0.71 | 0.781935 |
Target: 5'- gGCCuuCUUCuGGAGUgUGGCCAg--- -3' miRNA: 3'- -UGGuuGAAGuCCUCGgACCGGUaacu -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 110463 | 0.7 | 0.809615 |
Target: 5'- cACCAGCUUCuc-GGCCaUGGCCAggaaggUGAa -3' miRNA: 3'- -UGGUUGAAGuccUCGG-ACCGGUa-----ACU- -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 111416 | 0.7 | 0.835782 |
Target: 5'- -aCAGCagUCAGGAcucaGCCgUGGCCAUUGc -3' miRNA: 3'- ugGUUGa-AGUCCU----CGG-ACCGGUAACu -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 126192 | 0.69 | 0.852271 |
Target: 5'- gGCCGGCcagCGGGGGCCacGGCCAc--- -3' miRNA: 3'- -UGGUUGaa-GUCCUCGGa-CCGGUaacu -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 9929 | 0.69 | 0.870951 |
Target: 5'- aGCCcGCgagCAGGAgcagcugagcgaaaaGCCUGGCCAUg-- -3' miRNA: 3'- -UGGuUGaa-GUCCU---------------CGGACCGGUAacu -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 124133 | 0.69 | 0.879813 |
Target: 5'- gGCCAGCcauccgcccggggUCGGGAGgcgaggacCCUGGCCAgcgUGGc -3' miRNA: 3'- -UGGUUGa------------AGUCCUC--------GGACCGGUa--ACU- -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 120405 | 0.69 | 0.882693 |
Target: 5'- cACCGACggggUGGGGGCCaaccUGGCCAUc-- -3' miRNA: 3'- -UGGUUGaa--GUCCUCGG----ACCGGUAacu -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 161319 | 0.69 | 0.889731 |
Target: 5'- uGCCAACagUgAGGGGCa-GGCgCAUUGAa -3' miRNA: 3'- -UGGUUGa-AgUCCUCGgaCCG-GUAACU- -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 114339 | 0.68 | 0.896531 |
Target: 5'- cGCCccuGACggagguggaCGGGGGCCUGGCCcgcgUGAc -3' miRNA: 3'- -UGG---UUGaa-------GUCCUCGGACCGGua--ACU- -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 71242 | 0.68 | 0.90309 |
Target: 5'- gUCAACUcCuGGGGCCUGGCgGggGGc -3' miRNA: 3'- uGGUUGAaGuCCUCGGACCGgUaaCU- -5' |
|||||||
28917 | 3' | -53.6 | NC_006146.1 | + | 39800 | 0.68 | 0.909405 |
Target: 5'- cCCGGCUUCuGGGAcGgC-GGCCGUUGAc -3' miRNA: 3'- uGGUUGAAG-UCCU-CgGaCCGGUAACU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home