miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28917 3' -53.6 NC_006146.1 + 40135 0.67 0.93725
Target:  5'- cACCGuCUggaGGGGGgCUGGCCAUaccUGGa -3'
miRNA:   3'- -UGGUuGAag-UCCUCgGACCGGUA---ACU- -5'
28917 3' -53.6 NC_006146.1 + 152090 0.67 0.93725
Target:  5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3'
miRNA:   3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5'
28917 3' -53.6 NC_006146.1 + 158247 0.67 0.93725
Target:  5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3'
miRNA:   3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5'
28917 3' -53.6 NC_006146.1 + 149012 0.67 0.93725
Target:  5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3'
miRNA:   3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5'
28917 3' -53.6 NC_006146.1 + 145934 0.67 0.93725
Target:  5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3'
miRNA:   3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5'
28917 3' -53.6 NC_006146.1 + 142856 0.67 0.93725
Target:  5'- gGCCAcuggguCUUUAguuauGGGGCCUGGCCGg--- -3'
miRNA:   3'- -UGGUu-----GAAGU-----CCUCGGACCGGUaacu -5'
28917 3' -53.6 NC_006146.1 + 39800 0.68 0.909405
Target:  5'- cCCGGCUUCuGGGAcGgC-GGCCGUUGAc -3'
miRNA:   3'- uGGUUGAAG-UCCU-CgGaCCGGUAACU- -5'
28917 3' -53.6 NC_006146.1 + 71242 0.68 0.90309
Target:  5'- gUCAACUcCuGGGGCCUGGCgGggGGc -3'
miRNA:   3'- uGGUUGAaGuCCUCGGACCGgUaaCU- -5'
28917 3' -53.6 NC_006146.1 + 114339 0.68 0.896531
Target:  5'- cGCCccuGACggagguggaCGGGGGCCUGGCCcgcgUGAc -3'
miRNA:   3'- -UGG---UUGaa-------GUCCUCGGACCGGua--ACU- -5'
28917 3' -53.6 NC_006146.1 + 161319 0.69 0.889731
Target:  5'- uGCCAACagUgAGGGGCa-GGCgCAUUGAa -3'
miRNA:   3'- -UGGUUGa-AgUCCUCGgaCCG-GUAACU- -5'
28917 3' -53.6 NC_006146.1 + 120405 0.69 0.882693
Target:  5'- cACCGACggggUGGGGGCCaaccUGGCCAUc-- -3'
miRNA:   3'- -UGGUUGaa--GUCCUCGG----ACCGGUAacu -5'
28917 3' -53.6 NC_006146.1 + 124133 0.69 0.879813
Target:  5'- gGCCAGCcauccgcccggggUCGGGAGgcgaggacCCUGGCCAgcgUGGc -3'
miRNA:   3'- -UGGUUGa------------AGUCCUC--------GGACCGGUa--ACU- -5'
28917 3' -53.6 NC_006146.1 + 9929 0.69 0.870951
Target:  5'- aGCCcGCgagCAGGAgcagcugagcgaaaaGCCUGGCCAUg-- -3'
miRNA:   3'- -UGGuUGaa-GUCCU---------------CGGACCGGUAacu -5'
28917 3' -53.6 NC_006146.1 + 126192 0.69 0.852271
Target:  5'- gGCCGGCcagCGGGGGCCacGGCCAc--- -3'
miRNA:   3'- -UGGUUGaa-GUCCUCGGa-CCGGUaacu -5'
28917 3' -53.6 NC_006146.1 + 111416 0.7 0.835782
Target:  5'- -aCAGCagUCAGGAcucaGCCgUGGCCAUUGc -3'
miRNA:   3'- ugGUUGa-AGUCCU----CGG-ACCGGUAACu -5'
28917 3' -53.6 NC_006146.1 + 110463 0.7 0.809615
Target:  5'- cACCAGCUUCuc-GGCCaUGGCCAggaaggUGAa -3'
miRNA:   3'- -UGGUUGAAGuccUCGG-ACCGGUa-----ACU- -5'
28917 3' -53.6 NC_006146.1 + 128765 0.71 0.781935
Target:  5'- gGCCuuCUUCuGGAGUgUGGCCAg--- -3'
miRNA:   3'- -UGGuuGAAGuCCUCGgACCGGUaacu -5'
28917 3' -53.6 NC_006146.1 + 97356 0.71 0.772414
Target:  5'- aACCAcccgcccggggaGC-UCcGGAGCCUGGCCAUg-- -3'
miRNA:   3'- -UGGU------------UGaAGuCCUCGGACCGGUAacu -5'
28917 3' -53.6 NC_006146.1 + 39406 0.72 0.750035
Target:  5'- gGCCAcauggACUUgAagcagaaguuggccGGGGCCUGGCCcgUGAg -3'
miRNA:   3'- -UGGU-----UGAAgU--------------CCUCGGACCGGuaACU- -5'
28917 3' -53.6 NC_006146.1 + 165807 0.72 0.723041
Target:  5'- gGCCGGCUagGGGGGCguccCUGGCCGcgUGGa -3'
miRNA:   3'- -UGGUUGAagUCCUCG----GACCGGUa-ACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.