miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28917 5' -58.4 NC_006146.1 + 62836 0.66 0.817116
Target:  5'- cCCUGGCcGCCGuGGccAGGCCgGAGGUu -3'
miRNA:   3'- aGGACUGcCGGUuCC--UCCGG-UUCCAc -5'
28917 5' -58.4 NC_006146.1 + 70831 0.66 0.816266
Target:  5'- gUCUGG-GGCCAAGGgccaagcGGGCCc-GGUGa -3'
miRNA:   3'- aGGACUgCCGGUUCC-------UCCGGuuCCAC- -5'
28917 5' -58.4 NC_006146.1 + 139135 0.66 0.808541
Target:  5'- -gCUGugGGCCGAacGGGGGCUcccgucccccGGGGg- -3'
miRNA:   3'- agGACugCCGGUU--CCUCCGG----------UUCCac -5'
28917 5' -58.4 NC_006146.1 + 159884 0.66 0.808541
Target:  5'- cUCCUcgcaGAgGGCCuc-GAGGCCGGGGc- -3'
miRNA:   3'- -AGGA----CUgCCGGuucCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 46728 0.66 0.808541
Target:  5'- cUCCgaGGCgGGCgGAGGccacgcuGGCCAGGGUc -3'
miRNA:   3'- -AGGa-CUG-CCGgUUCCu------CCGGUUCCAc -5'
28917 5' -58.4 NC_006146.1 + 15018 0.66 0.808541
Target:  5'- cCCUGuuuGCCAGGGAggggcgccuGGCCAGGGc- -3'
miRNA:   3'- aGGACugcCGGUUCCU---------CCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 99021 0.66 0.807675
Target:  5'- gUCCgcgUGACGGCCGuguagAGGccccccaGGGCCcggcGGGUGu -3'
miRNA:   3'- -AGG---ACUGCCGGU-----UCC-------UCCGGu---UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 61817 0.66 0.799811
Target:  5'- gCCgGcACGGCaCGGGcGGGGUgAAGGUGa -3'
miRNA:   3'- aGGaC-UGCCG-GUUC-CUCCGgUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 115778 0.66 0.799811
Target:  5'- aCCgGA-GGCCGaguacgagcAGGuGGCCAGGGUu -3'
miRNA:   3'- aGGaCUgCCGGU---------UCCuCCGGUUCCAc -5'
28917 5' -58.4 NC_006146.1 + 113712 0.66 0.799811
Target:  5'- cUCUUGAUGuucuCCAccAGGGGGCCcacuGGGGUGa -3'
miRNA:   3'- -AGGACUGCc---GGU--UCCUCCGG----UUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 115417 0.66 0.797163
Target:  5'- -gCUGGCGGCCGGGccucguucucgcccGcGGCCAucgagcGGGUGg -3'
miRNA:   3'- agGACUGCCGGUUC--------------CuCCGGU------UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 42332 0.67 0.790935
Target:  5'- -gCUGACuGGCCcGGGAGGUCA--GUGu -3'
miRNA:   3'- agGACUG-CCGGuUCCUCCGGUucCAC- -5'
28917 5' -58.4 NC_006146.1 + 155792 0.67 0.790935
Target:  5'- gCCgcucGGUGGCCcuGGGGGCCAccgagucaaacAGGUGa -3'
miRNA:   3'- aGGa---CUGCCGGuuCCUCCGGU-----------UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 144769 0.67 0.788245
Target:  5'- gCCUGAUGGaCCcgguGgggagacaagcugaGGGGGGCCGGGGa- -3'
miRNA:   3'- aGGACUGCC-GG----U--------------UCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 147847 0.67 0.788245
Target:  5'- gCCUGAUGGaCCcgguGgggagacaagcugaGGGGGGCCGGGGa- -3'
miRNA:   3'- aGGACUGCC-GG----U--------------UCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 157081 0.67 0.788245
Target:  5'- gCCUGAUGGaCCcgguGgggagacaagcugaGGGGGGCCGGGGa- -3'
miRNA:   3'- aGGACUGCC-GG----U--------------UCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 154003 0.67 0.788245
Target:  5'- gCCUGAUGGaCCcgguGgggagacaagcugaGGGGGGCCGGGGa- -3'
miRNA:   3'- aGGACUGCC-GG----U--------------UCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 150925 0.67 0.788245
Target:  5'- gCCUGAUGGaCCcgguGgggagacaagcugaGGGGGGCCGGGGa- -3'
miRNA:   3'- aGGACUGCC-GG----U--------------UCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 170049 0.67 0.781921
Target:  5'- cCCUGGauGUCGGGGAGGgCCcGGGg- -3'
miRNA:   3'- aGGACUgcCGGUUCCUCC-GGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 167253 0.67 0.781921
Target:  5'- cCCUGGauGUCGGGGAGGgCCcGGGg- -3'
miRNA:   3'- aGGACUgcCGGUUCCUCC-GGuUCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.