miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28918 3' -52.7 NC_006146.1 + 167354 0.67 0.967613
Target:  5'- gGCUGCACgcGC-GGCGGCgccGGCCGGg -3'
miRNA:   3'- -CGAUGUGgaUGaCCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 24203 0.67 0.967613
Target:  5'- gGCUGgGCCUGCgaGGUucuGUUgGGGCCGGg -3'
miRNA:   3'- -CGAUgUGGAUGa-CCGu--CGA-CUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 160065 0.67 0.967613
Target:  5'- ----gGCCUGCUGGCuGGCUucgGAGCCu- -3'
miRNA:   3'- cgaugUGGAUGACCG-UCGA---CUUGGuc -5'
28918 3' -52.7 NC_006146.1 + 168286 0.67 0.967613
Target:  5'- gGCUGCACgcGC-GGCGGCgccGGCCGGg -3'
miRNA:   3'- -CGAUGUGgaUGaCCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 169218 0.67 0.967613
Target:  5'- gGCUGCACgcGC-GGCGGCgccGGCCGGg -3'
miRNA:   3'- -CGAUGUGgaUGaCCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 170149 0.67 0.967613
Target:  5'- gGCUGCACgcGC-GGCGGCgccGGCCGGg -3'
miRNA:   3'- -CGAUGUGgaUGaCCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 112968 0.67 0.967613
Target:  5'- uGCaGCACCa--UGGCGGCgccGGCCAGc -3'
miRNA:   3'- -CGaUGUGGaugACCGUCGac-UUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 50225 0.67 0.967295
Target:  5'- -gUGCACCcGCgagauggUGGCGGUggcugccuUGAACCAGg -3'
miRNA:   3'- cgAUGUGGaUG-------ACCGUCG--------ACUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 127690 0.67 0.960829
Target:  5'- cGCUGCACgUACUccucGUAGCaGGACUGGg -3'
miRNA:   3'- -CGAUGUGgAUGAc---CGUCGaCUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 30182 0.67 0.957092
Target:  5'- cCUGCACCUug-GGCacauugaggAGCagGAGCCAGa -3'
miRNA:   3'- cGAUGUGGAugaCCG---------UCGa-CUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 17863 0.67 0.957092
Target:  5'- --aAgACCUACgagGGcCAGCUGGGCaCGGa -3'
miRNA:   3'- cgaUgUGGAUGa--CC-GUCGACUUG-GUC- -5'
28918 3' -52.7 NC_006146.1 + 42714 0.67 0.95312
Target:  5'- --aGCGCCcgcucggGCUGGCAGCcgcgGAuCCGGg -3'
miRNA:   3'- cgaUGUGGa------UGACCGUCGa---CUuGGUC- -5'
28918 3' -52.7 NC_006146.1 + 53711 0.67 0.95312
Target:  5'- aCUGcCACCUcuCUGGCAcauguGgUGGACCAGg -3'
miRNA:   3'- cGAU-GUGGAu-GACCGU-----CgACUUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 118244 0.68 0.948907
Target:  5'- gGCUGCGCacgUACUGGgGGCcaGAGCCc- -3'
miRNA:   3'- -CGAUGUGg--AUGACCgUCGa-CUUGGuc -5'
28918 3' -52.7 NC_006146.1 + 41579 0.68 0.94445
Target:  5'- ---cCGCCUACUGGCuGGCcGAGgCGGa -3'
miRNA:   3'- cgauGUGGAUGACCG-UCGaCUUgGUC- -5'
28918 3' -52.7 NC_006146.1 + 53876 0.68 0.939746
Target:  5'- --aACACCUACUGGgAGCggcGGGgCGGc -3'
miRNA:   3'- cgaUGUGGAUGACCgUCGa--CUUgGUC- -5'
28918 3' -52.7 NC_006146.1 + 11967 0.68 0.939746
Target:  5'- cGCUACGCCUuuacCU-GCAGUUcuGCCAGg -3'
miRNA:   3'- -CGAUGUGGAu---GAcCGUCGAcuUGGUC- -5'
28918 3' -52.7 NC_006146.1 + 159928 0.68 0.939263
Target:  5'- aGCgcCGCCUGCuuuaggugcacugUGGCAgGCUGGGCUAa -3'
miRNA:   3'- -CGauGUGGAUG-------------ACCGU-CGACUUGGUc -5'
28918 3' -52.7 NC_006146.1 + 15438 0.68 0.92959
Target:  5'- gGCUGCAguCCUGcCUGGCgcAGCaGAGCgAGa -3'
miRNA:   3'- -CGAUGU--GGAU-GACCG--UCGaCUUGgUC- -5'
28918 3' -52.7 NC_006146.1 + 127039 0.68 0.928519
Target:  5'- cGCUGCGcgugucaccagaggcCCUcgaGCUGGCGGCgcgggaagccgaaaGGGCCAGg -3'
miRNA:   3'- -CGAUGU---------------GGA---UGACCGUCGa-------------CUUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.