Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 12320 | 1.1 | 0.001919 |
Target: 5'- cGGCUGUCUCGGCUGGGCAUAGACGCUg -3' miRNA: 3'- -CCGACAGAGCCGACCCGUAUCUGCGA- -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 12886 | 0.66 | 0.889362 |
Target: 5'- aGGCcggGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa--CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 13502 | 0.67 | 0.811251 |
Target: 5'- aGGCUGggaacCUgGGCuacuuuaUGGGCcgAGGCGUg -3' miRNA: 3'- -CCGACa----GAgCCG-------ACCCGuaUCUGCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 15964 | 0.67 | 0.845329 |
Target: 5'- aGGCcgGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa-CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 19041 | 0.66 | 0.889362 |
Target: 5'- aGGCcggGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa--CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 22119 | 0.66 | 0.889362 |
Target: 5'- aGGCcggGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa--CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 25197 | 0.66 | 0.889362 |
Target: 5'- aGGCcggGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa--CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 28275 | 0.66 | 0.889362 |
Target: 5'- aGGCcggGUCUCGGguCUGGGgGUcuguGGugGUg -3' miRNA: 3'- -CCGa--CAGAGCC--GACCCgUA----UCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 33589 | 0.67 | 0.829073 |
Target: 5'- cGCUGguccggUUUGGgUGGGCGUGGucCGCg -3' miRNA: 3'- cCGACa-----GAGCCgACCCGUAUCu-GCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 33958 | 0.71 | 0.588486 |
Target: 5'- cGCUgGUC-CGGgUGGGCGUGGucCGCUg -3' miRNA: 3'- cCGA-CAGaGCCgACCCGUAUCu-GCGA- -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 40827 | 0.66 | 0.889362 |
Target: 5'- uGGCcaUGagCUUGGUaagGGGCAggGGGCGCUc -3' miRNA: 3'- -CCG--ACa-GAGCCGa--CCCGUa-UCUGCGA- -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 41614 | 0.71 | 0.598554 |
Target: 5'- gGGCUGg-UCcGCUGGGCccGGGCGCa -3' miRNA: 3'- -CCGACagAGcCGACCCGuaUCUGCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 43628 | 0.67 | 0.837292 |
Target: 5'- aGGgaGUgggCGGCgGGGCGUGGcCGCc -3' miRNA: 3'- -CCgaCAga-GCCGaCCCGUAUCuGCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 44119 | 0.68 | 0.79452 |
Target: 5'- cGGCUGcC-CGGCgaggaggggGGGCA-GGACGUg -3' miRNA: 3'- -CCGACaGaGCCGa--------CCCGUaUCUGCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 47185 | 0.69 | 0.719099 |
Target: 5'- uGGCUGUCgggagccCGaGCUGGaCAcggAGACGCUg -3' miRNA: 3'- -CCGACAGa------GC-CGACCcGUa--UCUGCGA- -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 49082 | 0.66 | 0.860828 |
Target: 5'- gGGCUGaggCUcCGGCUGuGGCucAGGCgGCUu -3' miRNA: 3'- -CCGACa--GA-GCCGAC-CCGuaUCUG-CGA- -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 49482 | 0.68 | 0.776351 |
Target: 5'- gGGCcgcgGUgUCGGCcagGGGCGgcGugGCa -3' miRNA: 3'- -CCGa---CAgAGCCGa--CCCGUauCugCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 53356 | 0.68 | 0.785503 |
Target: 5'- cGGCgugagGUCUUGGCUGG-Ccc-GGCGCUu -3' miRNA: 3'- -CCGa----CAGAGCCGACCcGuauCUGCGA- -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 83366 | 0.67 | 0.829073 |
Target: 5'- uGGCcGUCaUGGa-GGGCAUGGAgGCa -3' miRNA: 3'- -CCGaCAGaGCCgaCCCGUAUCUgCGa -5' |
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28918 | 5' | -57.2 | NC_006146.1 | + | 88814 | 0.66 | 0.87552 |
Target: 5'- gGGCaUGUUU-GGCUGGGCcu-GAgGCUc -3' miRNA: 3'- -CCG-ACAGAgCCGACCCGuauCUgCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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