Results 21 - 35 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 44119 | 0.68 | 0.79452 |
Target: 5'- cGGCUGcC-CGGCgaggaggggGGGCA-GGACGUg -3' miRNA: 3'- -CCGACaGaGCCGa--------CCCGUaUCUGCGa -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 53356 | 0.68 | 0.785503 |
Target: 5'- cGGCgugagGUCUUGGCUGG-Ccc-GGCGCUu -3' miRNA: 3'- -CCGa----CAGAGCCGACCcGuauCUGCGA- -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 49482 | 0.68 | 0.776351 |
Target: 5'- gGGCcgcgGUgUCGGCcagGGGCGgcGugGCa -3' miRNA: 3'- -CCGa---CAgAGCCGa--CCCGUauCugCGa -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 115583 | 0.68 | 0.767073 |
Target: 5'- uGGCaaaUGcCUCGGCcGGGa--AGACGCUg -3' miRNA: 3'- -CCG---ACaGAGCCGaCCCguaUCUGCGA- -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 108565 | 0.68 | 0.757677 |
Target: 5'- uGGCUGggCUUGGCUGG-CGgcGGCGUc -3' miRNA: 3'- -CCGACa-GAGCCGACCcGUauCUGCGa -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 92171 | 0.69 | 0.728875 |
Target: 5'- cGCUGacaUUGGCUGGGCGUGGuuuacugaccACGUa -3' miRNA: 3'- cCGACag-AGCCGACCCGUAUC----------UGCGa -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 119942 | 0.69 | 0.724974 |
Target: 5'- cGGCgcugcugccggagGUCUCGGUgggGGGuCAggAGACGCc -3' miRNA: 3'- -CCGa------------CAGAGCCGa--CCC-GUa-UCUGCGa -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 47185 | 0.69 | 0.719099 |
Target: 5'- uGGCUGUCgggagccCGaGCUGGaCAcggAGACGCUg -3' miRNA: 3'- -CCGACAGa------GC-CGACCcGUa--UCUGCGA- -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 106470 | 0.69 | 0.705292 |
Target: 5'- aGGCUGUCUCGGCgccgagaccccaagUaucaugugcacggGGGCcaagucagacagGUGGGCGCa -3' miRNA: 3'- -CCGACAGAGCCG--------------A-------------CCCG------------UAUCUGCGa -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 95300 | 0.71 | 0.618756 |
Target: 5'- cGCUGUagaCGGUgGGGCAgUAGGCGCg -3' miRNA: 3'- cCGACAga-GCCGaCCCGU-AUCUGCGa -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 41614 | 0.71 | 0.598554 |
Target: 5'- gGGCUGg-UCcGCUGGGCccGGGCGCa -3' miRNA: 3'- -CCGACagAGcCGACCCGuaUCUGCGa -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 33958 | 0.71 | 0.588486 |
Target: 5'- cGCUgGUC-CGGgUGGGCGUGGucCGCUg -3' miRNA: 3'- cCGA-CAGaGCCgACCCGUAUCu-GCGA- -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 103023 | 0.71 | 0.586476 |
Target: 5'- uGCUgGUCUCGGCcgcuuacuauuuuugGGGCAUuccuugcacgauugAGACGCUg -3' miRNA: 3'- cCGA-CAGAGCCGa--------------CCCGUA--------------UCUGCGA- -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 119121 | 0.73 | 0.499996 |
Target: 5'- uGGCUGgaCUCGGCucUGGGCAgAGAgGCc -3' miRNA: 3'- -CCGACa-GAGCCG--ACCCGUaUCUgCGa -5' |
|||||||
28918 | 5' | -57.2 | NC_006146.1 | + | 12320 | 1.1 | 0.001919 |
Target: 5'- cGGCUGUCUCGGCUGGGCAUAGACGCUg -3' miRNA: 3'- -CCGACAGAGCCGACCCGUAUCUGCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home