miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 3' -62 NC_006146.1 + 147450 0.67 0.613059
Target:  5'- uUGgGGGCgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- cGCgUCCG-CGACgCgCAGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 144372 0.67 0.613059
Target:  5'- uUGgGGGCgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- cGCgUCCG-CGACgCgCAGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 141294 0.67 0.613059
Target:  5'- uUGgGGGCgGCUGgGgGUCGGGCuGGc -3'
miRNA:   3'- cGCgUCCG-CGACgCgCAGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 54023 0.67 0.613059
Target:  5'- -aGCAGGCacuGCUGCGCcugGcCGGGCcGGa -3'
miRNA:   3'- cgCGUCCG---CGACGCG---CaGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 56251 0.67 0.593418
Target:  5'- gGCGgAGGCGggGC-CGUCcucGGCGGGg -3'
miRNA:   3'- -CGCgUCCGCgaCGcGCAGu--CCGUCCa -5'
28919 3' -62 NC_006146.1 + 122674 0.67 0.592438
Target:  5'- cGCGC-GGCGCUcacccagGCGCGcCAGGCc--- -3'
miRNA:   3'- -CGCGuCCGCGA-------CGCGCaGUCCGucca -5'
28919 3' -62 NC_006146.1 + 168359 0.67 0.583634
Target:  5'- aGCGCGGGgucccgggGCgGgGgGUCGGGCGGGc -3'
miRNA:   3'- -CGCGUCCg-------CGaCgCgCAGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 167427 0.67 0.583634
Target:  5'- aGCGCGGGgucccgggGCgGgGgGUCGGGCGGGc -3'
miRNA:   3'- -CGCGUCCg-------CGaCgCgCAGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 169291 0.67 0.583634
Target:  5'- aGCGCGGGgucccgggGCgGgGgGUCGGGCGGGc -3'
miRNA:   3'- -CGCGUCCg-------CGaCgCgCAGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 170222 0.67 0.583634
Target:  5'- aGCGCGGGgucccgggGCgGgGgGUCGGGCGGGc -3'
miRNA:   3'- -CGCGUCCg-------CGaCgCgCAGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 129131 0.67 0.573882
Target:  5'- gGCGCccGGGCGCaGgGCcUCcGGCGGGa -3'
miRNA:   3'- -CGCG--UCCGCGaCgCGcAGuCCGUCCa -5'
28919 3' -62 NC_006146.1 + 155250 0.68 0.54488
Target:  5'- cGUGCAGGUGCUcgGCGCucagcgucugaGUaaaCAGGUGGGUc -3'
miRNA:   3'- -CGCGUCCGCGA--CGCG-----------CA---GUCCGUCCA- -5'
28919 3' -62 NC_006146.1 + 124193 0.68 0.54488
Target:  5'- -gGgGGGCGCUGa--G-CAGGCAGGUg -3'
miRNA:   3'- cgCgUCCGCGACgcgCaGUCCGUCCA- -5'
28919 3' -62 NC_006146.1 + 43351 0.68 0.535314
Target:  5'- -aGCAGGCGCaGCcCGU--GGCAGGg -3'
miRNA:   3'- cgCGUCCGCGaCGcGCAguCCGUCCa -5'
28919 3' -62 NC_006146.1 + 44747 0.68 0.525809
Target:  5'- cCGCGGGCgGCUGUGguugucggggccCGgCGGGCGGGg -3'
miRNA:   3'- cGCGUCCG-CGACGC------------GCaGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 110853 0.68 0.524862
Target:  5'- gGCGCccgaucagaGGGaCGCUGCgucucgggcucggGCG-CAGGCGGGg -3'
miRNA:   3'- -CGCG---------UCC-GCGACG-------------CGCaGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 43892 0.68 0.522969
Target:  5'- uGCGCAGGCugggagcccacagaGCUccgggaccGCGUcgcccggcaGUCGGGCGGGg -3'
miRNA:   3'- -CGCGUCCG--------------CGA--------CGCG---------CAGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 128204 0.69 0.497696
Target:  5'- -aGCGGGCGCUGgGgGgcucugccagccUCAGGCAGc- -3'
miRNA:   3'- cgCGUCCGCGACgCgC------------AGUCCGUCca -5'
28919 3' -62 NC_006146.1 + 21247 0.69 0.487555
Target:  5'- cGUGCAGGCGCgcugccgGCGCGUgcucgaccuggugCuGGCGGa- -3'
miRNA:   3'- -CGCGUCCGCGa------CGCGCA-------------GuCCGUCca -5'
28919 3' -62 NC_006146.1 + 155430 0.69 0.478423
Target:  5'- cGCGCAGGCacagcgucucgGUcagggucucgcucUGCuGCGcCAGGCAGGa -3'
miRNA:   3'- -CGCGUCCG-----------CG-------------ACG-CGCaGUCCGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.