Results 61 - 80 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28919 | 5' | -53.4 | NC_006146.1 | + | 120062 | 0.67 | 0.942829 |
Target: 5'- uGGcGCUGCUGcgccGGGAAGaCGGAGCCc-- -3' miRNA: 3'- -CCuCGACGAC----CUUUUC-GUCUCGGacg -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 97858 | 0.67 | 0.946918 |
Target: 5'- gGGGGCcGCcgaccccgggccgUGGAAcgaGGGCcuGAGCCUGUu -3' miRNA: 3'- -CCUCGaCG-------------ACCUU---UUCGu-CUCGGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 51172 | 0.67 | 0.933028 |
Target: 5'- uGGGCUG-UGGAGccGgGGAGgCUGCu -3' miRNA: 3'- cCUCGACgACCUUuuCgUCUCgGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 132584 | 0.67 | 0.942363 |
Target: 5'- cGGAGCggcaaaacguaucUgggGCUGGGAAAGauggaaAGGGCCgGCa -3' miRNA: 3'- -CCUCG-------------A---CGACCUUUUCg-----UCUCGGaCG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 143182 | 0.67 | 0.951646 |
Target: 5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3' miRNA: 3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 35794 | 0.67 | 0.941894 |
Target: 5'- cGGAGCaaacccaaaccCUGGGAAAGCgaGGGGCCcGUg -3' miRNA: 3'- -CCUCGac---------GACCUUUUCG--UCUCGGaCG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 86611 | 0.67 | 0.942829 |
Target: 5'- aGGGGCaGCUGGGcuuGAGgGGcAGCUggGCa -3' miRNA: 3'- -CCUCGaCGACCUu--UUCgUC-UCGGa-CG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 49246 | 0.67 | 0.938053 |
Target: 5'- uGGAGaagGCUGGAugcucuGAGGCGGAGaaggggGCg -3' miRNA: 3'- -CCUCga-CGACCU------UUUCGUCUCgga---CG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 43218 | 0.67 | 0.938053 |
Target: 5'- gGGGcGCUGCUGGu-GAGaGGAGCCc-- -3' miRNA: 3'- -CCU-CGACGACCuuUUCgUCUCGGacg -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 15033 | 0.67 | 0.938053 |
Target: 5'- aGGGGC-GcCUGGccAGGGCccgccGGGCCUGCg -3' miRNA: 3'- -CCUCGaC-GACCu-UUUCGu----CUCGGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 168519 | 0.67 | 0.933028 |
Target: 5'- aGAGCccuCUGGAAGcccGCGGAcGCCUGUc -3' miRNA: 3'- cCUCGac-GACCUUUu--CGUCU-CGGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 138695 | 0.67 | 0.933028 |
Target: 5'- gGGAGUUGgUGGAGuauCAGAgGgCUGCg -3' miRNA: 3'- -CCUCGACgACCUUuucGUCU-CgGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 36221 | 0.67 | 0.942829 |
Target: 5'- gGGAGCgcaagccgGCcgGGGagGAGGCAGGGCg-GCu -3' miRNA: 3'- -CCUCGa-------CGa-CCU--UUUCGUCUCGgaCG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 39967 | 0.67 | 0.94736 |
Target: 5'- -cGGCUGgggaaGGAGAGGCuGAGgCUGCu -3' miRNA: 3'- ccUCGACga---CCUUUUCGuCUCgGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 21216 | 0.67 | 0.94736 |
Target: 5'- uGGAGCUGgUcaGGAAAAc---GGCCUGCa -3' miRNA: 3'- -CCUCGACgA--CCUUUUcgucUCGGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 122861 | 0.67 | 0.94736 |
Target: 5'- cGGGGC-GCUGGAcGAcCcGAGCCgGCc -3' miRNA: 3'- -CCUCGaCGACCUuUUcGuCUCGGaCG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 73205 | 0.67 | 0.950386 |
Target: 5'- aGGGGCUcCUGGcguucucgaucaucGAGAGCAGGGC--GCa -3' miRNA: 3'- -CCUCGAcGACC--------------UUUUCGUCUCGgaCG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 103623 | 0.67 | 0.938053 |
Target: 5'- cGGAGCUcgcaaGCUGGcacgcGGAGGaGGGGCCcGCc -3' miRNA: 3'- -CCUCGA-----CGACC-----UUUUCgUCUCGGaCG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 40027 | 0.67 | 0.951646 |
Target: 5'- gGGGGcCUGCUGGG--GGCcGuAGCCgacuccgGCg -3' miRNA: 3'- -CCUC-GACGACCUuuUCGuC-UCGGa------CG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 139547 | 0.67 | 0.951646 |
Target: 5'- gGGGGCUGCgUGuGuuGAGUAuaauGAGgCCUGUa -3' miRNA: 3'- -CCUCGACG-AC-CuuUUCGU----CUC-GGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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